Hg_chrom3_TN10mRNA_5415
Organism: Heterodera glycines Gene Locus: chr3:6094048-6098436 Feature type: polypeptideProtein Sequence
Length: 971
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.91 | 1.748 | 0.58 | 0.32 | 1.322 | 1.426 | 0.797 | 1.133 | 1.304 | 1.433 | 0.718 | 1.757 | 1.144 | 0.911 | 0.904 | 1.295 | 0.861 | 0.718 | 0.317 | 0.333 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5138
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-29
|
0.946
|
1.000
|
1.000
|
1.000
|
0.213
|
0.036
|
0.045
|
0.252
|
0.218
|
0.514
|
0.279
|
0.069
|
0.811
|
0.245
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003576
|
1.000
|
2.000
|
Hsc_gene_1133.t1;Hsc_gene_1133.t2
|
Hsc_gene_1133.t1;Hsc_gene_1133.t2
|
— |
Q93373.2 Leucine-rich repeat-containing protein let-4 [Caenorhabditis elegans]
|
KAI1732276.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.858|GO:0110165_0.857|GO:0008150_0.734|GO:0016020_0.567|GO:0032501_0.550|GO:0071944_0.511
|
IPR001611+145-204_168-189_291-312_292-350_339-360_387-446_411-432+|IPR003591+94-117_166-189_191-214_240-263_265-288_290-312_313-336_337-360_385-408_410-432+|IPR032675+79-216_217-346_347-531+|IPR050541+10-214+
|
SM00365+166-184_191-217_313-334_337-358_385-405+|SM00369+94-117_166-189_191-214_240-263_265-288_290-312_313-336_337-360_385-408_410-432+
|
PF13855+145-204_292-350_387-446+Leucine_rich_repeat
|
— |
PTHR24369+10-214+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
487-842
|
2.000
|
1-486;843-971
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
106627.730
|
5.904
|
-8.000
|
22.554
|
7.930
|
49.949
|
50.051
|
11.432
|
11.123
|
49.949
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
701.531
|
260.286
|
160.569
|
151.136
|
609.390
|
422.479
|
591.754
|
143.106
|
39.260
|
2162.731
|
1252.672
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.927
|
-0.921
|
— |
1.979
|
-0.513
|
0.495
|
-1.672
|
2.191
|
-5.916
|
— | — | — | — |