Hg_chrom3_TN10mRNA_5416
Organism: Heterodera glycines Gene Locus: chr3:6102258-6102672 Feature type: polypeptideProtein Sequence
Length: 123
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.756 | 2.08 | 0.148 | 0.0 | 1.084 | 0.625 | 0.774 | 0.0 | 0.723 | 0.439 | 0.37 | 2.391 | 4.065 | 2.971 | 0.83 | 2.555 | 0.133 | 0.246 | 0.625 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5139
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1192;Hsc_gene_1209;Hsc_gene_1194;Hsc_gene_1207;Hsc_gene_1172
|
— | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-20
|
0.965
|
1.000
|
0.000
|
0.000
|
0.310
|
0.254
|
0.061
|
0.322
|
0.109
|
0.021
|
0.045
|
0.043
|
0.033
|
0.921
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000816
|
3.000
|
3.000
|
Hsc_gene_1194.t1;Hsc_gene_1207.t1;Hsc_gene_1209.t1
|
Hsc_gene_1172.t1;Hsc_gene_1194.t1;Hsc_gene_1207.t1;Hsc_gene_1209.t1
|
— | — |
AJR19777.1 esophageal gland-localized secretory protein 9 [Heterodera glycines]
|
RAP26485
|
0.330
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
117-123
|
1.000
|
1-116
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
13453.010
|
5.002
|
-1.000
|
13.821
|
15.447
|
43.902
|
56.098
|
6.504
|
7.317
|
58.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
6107.821
|
9.103
|
2939.006
|
4128.501
|
439.102
|
90.368
|
26.757
|
5362.677
|
28946.619
|
138.435
|
12484.799
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
8.109
|
8.686
|
0.595
|
-3.265
|
-2.266
|
-1.748
|
5.796
|
-7.511
|
7.581
|
-2.686
|
— | — | — |