Hg_chrom3_TN10mRNA_5418
Organism: Heterodera glycines Gene Locus: chr3:6105938-6107811 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.187 | 0.838 | 0.491 | 0.932 | 0.751 | 1.54 | 0.965 | 1.051 | 1.001 | 1.177 | 0.683 | 2.12 | 1.668 | 0.809 | 1.103 | 1.287 | 0.788 | 0.819 | 0.924 | 0.795 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5141
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain|mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.072
|
— | — |
0.106
|
0.886
|
0.073
|
0.156
|
0.195
|
0.203
|
0.170
|
0.126
|
0.187
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007630
|
1.000
|
1.000
|
Hsc_gene_1130.t1
|
Hsc_gene_1130.t1
|
— |
Q08DK7.1 Mitochondrial basic amino acids transporter [Bos taurus]
|
KAI6186740.1 putative carnitine/acylcarnitine carrier protein CACL [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.857|GO:0005575_0.846|GO:0110165_0.840|GO:0016020_0.772|GO:0005622_0.734|GO:0009987_0.714|GO:0043226_0.702|GO:0005737_0.689|GO:0043229_0.679|GO:0043227_0.662|GO:0003674_0.661|GO:0043231_0.650|GO:0051179_0.648|GO:0006810_0.642|GO:0051234_0.642|GO:0055085_0.501
|
IPR018108+3-90_4-90_95-190_99-191_202-285_203-289+|IPR023395+1-96_5-280_97-321+|IPR050567+3-287+
|
— |
PF00153+4-90_99-191_203-289+Mitochondrial_carrier_protein
|
G3DSA:1.50.40.10:FF:000037+7-294+Solute_carrier_family_25_member_29
|
PTHR45624+3-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.894
|
36586.050
|
9.054
|
12.500
|
19.219
|
12.012
|
42.643
|
57.357
|
12.012
|
7.207
|
50.751
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
purple
|
366.297
|
249.977
|
190.444
|
356.971
|
598.425
|
887.709
|
323.238
|
1157.216
|
1.382
|
190.021
|
109.176
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.622
|
0.377
|
1.016
|
0.712
|
0.584
|
-1.447
|
— |
-1.699
|
-7.355
|
8.347
|
— | — | — |
No JSON data available for plots.