Hg_chrom3_TN10mRNA_5419
Organism: Heterodera glycines Gene Locus: chr3:6109090-6109997 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 1.252 | 1.538 | 0.531 | 1.282 | 1.183 | 0.824 | 1.538 | 1.026 | 1.143 | 1.166 | 0.905 | 1.923 | 0.296 | 0.785 | 0.659 | 1.135 | 0.699 | 1.183 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5142
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus|extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.606
|
0.363
|
0.183
|
0.590
|
0.140
|
0.197
|
0.115
|
0.086
|
0.194
|
0.680
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
WP_280660021.1 DUF4440 domain-containing protein [Sinorhizobium garamanticum];WEX88007.1 DUF4440 domain-containing protein [Sinorhizobium garamanticum]
|
HEU0194958
|
1.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR027843+16-123+|IPR032710+11-128+
|
— |
PF14534+16-123+Domain_of_unknown_function_(DUF4440)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
14870.610
|
4.964
|
-4.000
|
30.769
|
14.615
|
52.308
|
47.692
|
14.615
|
16.154
|
46.923
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
257.639
|
53.181
|
1230.314
|
156.293
|
40.155
|
61.201
|
18.897
|
1269.995
|
47.687
|
30.141
|
37.661
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.303
|
1.417
|
-2.867
|
-1.996
|
0.624
|
-1.683
|
4.276
|
-5.927
|
— | — | — | — | — |
No JSON data available for plots.