Hg_chrom3_TN10mRNA_5420
Organism: Heterodera glycines Gene Locus: chr3:6110630-6118026 Feature type: polypeptideProtein Sequence
Length: 1,620
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.184 | 1.005 | 0.808 | 0.681 | 1.101 | 1.029 | 0.735 | 1.296 | 1.043 | 1.401 | 0.636 | 1.089 | 1.698 | 0.855 | 1.285 | 1.155 | 0.87 | 0.832 | 0.95 | 0.472 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5143
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.968
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-21
|
0.965
|
1.000
|
7.000
|
7.000
|
0.096
|
0.031
|
0.034
|
0.144
|
0.228
|
0.367
|
0.480
|
0.022
|
0.872
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003577
|
2.000
|
1.000
|
Hsc_gene_1129.t1
|
Hsc_gene_1129.t1
|
— | — |
KAI1700073.1 7 transmembrane sweet-taste receptor of 3 GCPR domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.969|GO:0005575_0.945|GO:0110165_0.945|GO:0009987_0.935|GO:0003674_0.873|GO:0065007_0.864|GO:0050789_0.849|GO:0050794_0.825|GO:0050896_0.813|GO:0051716_0.782|GO:0023052_0.764|GO:0005488_0.763|GO:0007154_0.759|GO:0007165_0.735|GO:0016020_0.721|GO:0071944_0.709|GO:0005886_0.704|GO:0007267_0.702|GO:0007186_0.690|GO:0060089_0.689|GO:0004888_0.686|GO:0038023_0.686|GO:0065009_0.686|GO:0003824_0.684|GO:0050790_0.684|GO:0004016_0.676|GO:0009975_0.676|GO:0016829_0.676|GO:0016849_0.676|GO:0031279_0.676|GO:0045761_0.676|GO:0051339_0.676|GO:0044092_0.675|GO:0043086_0.674|GO:0030054_0.673|GO:0007194_0.670|GO:0031280_0.670|GO:0036094_0.670|GO:0051350_0.670|GO:0043167_0.669|GO:0043168_0.661|GO:0004930_0.656|GO:0008066_0.650|GO:0016595_0.650|GO:0016597_0.650|GO:0031406_0.650|GO:0043177_0.650|GO:0005622_0.621|GO:0045202_0.621|GO:0005515_0.511
|
IPR017978+1225-1475_1261-1481+|IPR028082+76-462_763-1040+|IPR050726+78-470+
|
— |
PF00003+1225-1475+7_transmembrane_sweet-taste_receptor_of_3_GCPR
|
— |
PTHR24060+78-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
830-890;1517-1620
|
2.000
|
1-829;891-1516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
179577.520
|
7.001
|
12.000
|
24.136
|
11.543
|
45.864
|
54.136
|
13.086
|
11.049
|
50.432
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
2546.182
|
812.864
|
1129.703
|
2022.412
|
4881.376
|
13431.940
|
2249.562
|
2755.129
|
153.561
|
793.256
|
519.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.247
|
1.178
|
0.948
|
1.239
|
1.476
|
-2.570
|
-2.404
|
— | — | — |
2.836
|
— | — |