Hg_chrom3_TN10mRNA_5421
Organism: Heterodera glycines Gene Locus: chr3:6123362-6126077 Feature type: polypeptideProtein Sequence
Length: 535
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.043 | 0.826 | 0.408 | 0.709 | 0.872 | 0.623 | 0.979 | 0.748 | 1.703 | 1.743 | 0.34 | 1.869 | 1.713 | 0.863 | 1.373 | 1.041 | 0.735 | 1.076 | 1.725 | 0.385 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5144
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.744
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— |
KKPGEKRRNLRRKVER
|
— | — |
1-46
|
0.989
|
— | — |
0.000
|
— | — |
0.086
|
0.233
|
0.040
|
0.191
|
0.288
|
0.698
|
0.480
|
0.010
|
0.430
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007631
|
1.000
|
1.000
|
Hsc_gene_1127.t1
|
Hsc_gene_1127.t1
|
— |
O34718.1 Major myo-inositol transporter IolT [Bacillus subtilis subsp. subtilis str. 168]
|
KAF7637130.1 MFS domain-containing protein [Meloidogyne graminicola]
|
WP_029720464
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.902|GO:0005575_0.862|GO:0110165_0.862|GO:0016020_0.831|GO:0009987_0.783|GO:0006810_0.758|GO:0051179_0.758|GO:0051234_0.758|GO:0003674_0.713|GO:0055085_0.707|GO:0005886_0.706|GO:0071944_0.706|GO:0005215_0.602|GO:0022857_0.602
|
IPR003663+22-492_51-61_134-153_309-319_398-419_421-433+|IPR005828+45-497+|IPR005829+139-164_353-369+|IPR020846+43-486+|IPR036259+33-496_36-500+|IPR050814+41-520+
|
— |
PF00083+45-497+Sugar_(and_other)_transporter
|
— |
PTHR48020+41-520+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
535-535
|
1.000
|
1-534
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
58994.380
|
8.700
|
12.000
|
17.944
|
11.215
|
35.701
|
64.299
|
10.467
|
7.477
|
48.411
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
492.132
|
782.832
|
320.181
|
392.871
|
293.941
|
116.005
|
146.986
|
183.287
|
416.915
|
1001.852
|
751.165
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.520
|
-1.132
|
0.404
|
-0.450
|
-1.327
|
0.352
|
0.548
|
— | — | — | — | — | — |
No JSON data available for plots.