Hg_chrom3_TN10mRNA_5422
Organism: Heterodera glycines Gene Locus: chr3:6126996-6128962 Feature type: polypeptideProtein Sequence
Length: 385
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 0.906 | 1.37 | 0.537 | 0.779 | 0.666 | 0.897 | 0.909 | 1.443 | 1.509 | 0.866 | 0.611 | 2.02 | 1.099 | 1.166 | 1.002 | 0.426 | 0.866 | 0.599 | 0.917 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5145
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.210
|
0.291
|
0.049
|
0.134
|
0.875
|
0.461
|
0.409
|
0.009
|
0.204
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007632
|
1.000
|
1.000
|
Hsc_gene_1126.t1
|
Hsc_gene_1126.t1
|
— |
Q7TP48.2 Adipocyte plasma membrane-associated protein [Rattus norvegicus]
|
KAI1720173.1 strictosidine synthase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058|GO:0016844
|
GO:0005575_0.768|GO:0110165_0.767|GO:0016020_0.647|GO:0005622_0.610|GO:0005737_0.590|GO:0008150_0.561|GO:0043226_0.525|GO:0043229_0.512
|
IPR011042+44-385+|IPR018119+164-250+
|
— |
PF03088+164-250+Strictosidine_synthase
|
— |
PTHR10426+31-380+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-385
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
42902.200
|
6.605
|
0.500
|
25.455
|
12.987
|
41.558
|
58.442
|
13.247
|
12.208
|
49.610
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightgreen
|
1671.976
|
201.014
|
1250.663
|
2340.892
|
4712.703
|
4023.695
|
3458.171
|
1181.548
|
165.590
|
752.447
|
500.937
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.410
|
3.405
|
1.012
|
0.977
|
-0.214
|
-0.208
|
-1.874
|
1.692
|
— | — |
2.825
|
— | — |
No JSON data available for plots.