Hg_chrom3_TN10mRNA_5424
Organism: Heterodera glycines Gene Locus: chr3:6130605-6131221 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 0.813 | 0.636 | 2.17 | 1.515 | 1.434 | 0.583 | 1.399 | 0.622 | 1.607 | 0.848 | 1.234 | 2.331 | 0.807 | 0.999 | 1.099 | 0.802 | 0.742 | 0.0 | 0.206 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5147
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— | — | — |
17-40
|
0.983
|
— |
0.609
|
0.019
|
0.000
|
— |
0.215
|
0.450
|
0.042
|
0.163
|
0.207
|
0.047
|
0.053
|
0.005
|
0.148
|
0.973
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007634
|
1.000
|
1.000
|
Hsc_gene_1124.t1
|
Hsc_gene_1124.t1
|
— | — |
KAI1727148.1 cystine-knot domain-containing protein [Ditylenchus destructor]
|
No
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR029034+56-143_60-139+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-143
|
8enf_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
16143.560
|
6.079
|
-1.000
|
25.874
|
11.888
|
47.552
|
52.448
|
13.287
|
12.587
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
55.087
|
10.665
|
77.082
|
47.140
|
43.567
|
33.852
|
29.605
|
95.501
|
9.675
|
107.220
|
65.415
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.626
|
2.008
|
-0.600
|
— | — | — |
1.395
|
-1.549
|
— | — | — | — | — |