Hg_chrom3_TN10mRNA_5429
Organism: Heterodera glycines Gene Locus: chr3:6142840-6144367 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.002 | 1.403 | 1.045 | 0.694 | 0.766 | 1.032 | 0.547 | 1.868 | 1.596 | 1.281 | 0.914 | 2.197 | 1.517 | 0.829 | 1.114 | 0.698 | 1.131 | 0.653 | 0.663 | 0.592 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5151
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.604
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.390
|
0.645
|
0.012
|
0.681
|
0.172
|
0.092
|
0.066
|
0.045
|
0.213
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007637
|
1.000
|
1.000
|
Hsc_gene_1120.t1
|
Hsc_gene_1120.t1
|
— |
Q17693.2 Probable methylenetetrahydrofolate reductase (NADPH) [Caenorhabditis elegans]
|
KAI1711472.1 methylenetetrahydrofolate reductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004489|GO:0006555
|
GO:0003674_0.719|GO:0005575_0.662|GO:0008150_0.661|GO:0003824_0.605|GO:0110165_0.604|GO:0009987_0.599|GO:0005622_0.526|GO:0008152_0.524|GO:0016491_0.522|GO:0044238_0.503
|
IPR003171+15-309_20-308+|IPR029041+13-312+
|
— |
PF02219+15-309+Methylenetetrahydrofolate_reductase
|
— |
PTHR45754+8-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
327-348
|
1.000
|
1-326
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
39401.430
|
8.391
|
10.500
|
25.575
|
12.069
|
47.414
|
52.586
|
15.230
|
10.345
|
47.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
magenta
|
117.472
|
109.770
|
54.981
|
200.128
|
112.622
|
403.233
|
181.504
|
203.966
|
13.203
|
29.213
|
22.351
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.231
|
0.729
|
1.976
|
-0.859
|
1.854
|
-1.141
|
-1.086
|
— | — | — | — | — | — |
No JSON data available for plots.