Hg_chrom3_TN10mRNA_5430
Organism: Heterodera glycines Gene Locus: chr3:6143910-6148208 Feature type: polypeptideProtein Sequence
Length: 816
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.997 | 1.225 | 0.869 | 0.972 | 1.348 | 0.723 | 0.481 | 1.164 | 1.171 | 1.474 | 0.836 | 1.081 | 2.315 | 0.919 | 1.175 | 1.401 | 0.402 | 0.706 | 0.943 | 0.216 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5152
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.752
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKWSAGEENASRLRRRTG
|
8-28
|
0.991
|
— | — | — | — |
0.000
|
— | — |
0.554
|
0.305
|
0.122
|
0.547
|
0.119
|
0.108
|
0.070
|
0.110
|
0.146
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007638
|
1.000
|
1.000
|
Hsc_gene_1119.t1
|
Hsc_gene_1119.t1
|
— |
A0A061IR73.1 Peroxisomal ATPase PEX6 [Cricetulus griseus]
|
KAI3415579.1 peroxisomal assembly protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.893|GO:0110165_0.875|GO:0008150_0.814|GO:0005622_0.791|GO:0016020_0.748|GO:0009987_0.738|GO:0043226_0.695|GO:0043229_0.654|GO:0005737_0.649|GO:0043227_0.640|GO:0043231_0.611|GO:0003674_0.570|GO:0065007_0.555|GO:0008152_0.510
|
IPR003593+584-724+|IPR003959+588-720+|IPR027417+542-790_543-813+|IPR050168+310-812+
|
SM00382+584-724+
|
PF00004+588-720+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
G3DSA:3.40.50.300:FF:001025+542-722+ATPase_family,_AAA_domain-containing_2B
|
PTHR23077+310-812+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-816
|
8ub4_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
92123.390
|
6.218
|
-3.500
|
26.471
|
12.623
|
46.814
|
53.186
|
13.603
|
12.868
|
47.181
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
tan
|
1436.474
|
1100.982
|
1930.690
|
1132.751
|
981.663
|
1491.595
|
1026.028
|
1563.756
|
2113.216
|
1239.362
|
1613.871
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
-0.096
|
-0.660
|
-0.239
|
0.618
|
-0.531
|
— |
-0.467
|
— | — | — | — | — |
No JSON data available for plots.