SCN Proteipedia

Hg_chrom3_TN10mRNA_5432

Organism: Heterodera glycines Gene Locus: chr3:6154139-6157536 Feature type: polypeptide

Protein Sequence

Length: 734

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.046	0.792	0.941	0.799	0.999	1.362	0.6	1.362	1.06	1.436	0.908	1.282	1.249	0.996	0.89	0.934	0.893	1.177	0.943	0.721	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5154	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.460	0.235	0.054	0.741	0.122	0.165	0.144	0.026	0.169	0.159

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007639	1.000	1.000	Hsc_gene_1117.t1	Hsc_gene_1117.t1	—	Q9PB72.1 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Xylella fastidiosa 9a5c]	KAI1711471.1 cobalamin-independent synthase, catalytic domain-containing protein [Ditylenchus destructor]	WP_183973065	0.320

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003871\|GO:0008270\|GO:0008652\|GO:0009086	GO:0005575_0.834\|GO:0110165_0.814\|GO:0003674_0.800\|GO:0008150_0.800\|GO:0005622_0.750\|GO:0009987_0.736\|GO:0008152_0.667\|GO:0016020_0.663\|GO:0005737_0.658\|GO:0044238_0.636\|GO:0003824_0.635\|GO:0044237_0.627\|GO:0009058_0.621\|GO:0044249_0.588\|GO:0044281_0.572\|GO:0016740_0.558\|GO:0006082_0.542\|GO:0019752_0.542\|GO:0043436_0.542\|GO:0044283_0.537\|GO:0006520_0.532\|GO:0016053_0.531\|GO:0046394_0.531\|GO:1901605_0.530\|GO:0170033_0.529\|GO:0170039_0.529\|GO:0006790_0.528\|GO:0008652_0.527\|GO:1901607_0.527\|GO:0170038_0.526\|GO:0000096_0.523\|GO:0000097_0.523\|GO:0006555_0.523\|GO:0009066_0.523\|GO:0009067_0.523\|GO:0009086_0.523\|GO:0044272_0.523\|GO:0170034_0.523\|GO:0008168_0.511\|GO:0016741_0.511\|GO:0008172_0.507	IPR002629+488-728_489-728+\|IPR006276+8-731+\|IPR013215+11-351+\|IPR038071+15-581_16-448_443-728_461-728+	—	PF01717+488-728+Cobalamin-independent_synthase,_Catalytic_domain\|PF08267+11-351+Cobalamin-independent_synthase,_N-terminal_domain	—	PTHR30519+12-727+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-734	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.566	81779.080	6.826	4.000	24.251	10.899	44.959	55.041	13.079	11.172	49.864

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	2891.578	1258.242	986.799	6170.766	10458.667	4236.105	5298.041	1443.778	35.157	1429.636	832.002

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.578	2.157	2.752	0.730	-1.289	0.333	-1.657	2.017	-5.472	7.648	3.098	—	—

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