Hg_chrom3_TN10mRNA_5434
Organism: Heterodera glycines Gene Locus: chr3:6161013-6164893 Feature type: polypeptideProtein Sequence
Length: 814
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.743 | 0.857 | 0.871 | 0.551 | 0.717 | 0.851 | 0.804 | 1.351 | 1.884 | 1.378 | 0.651 | 1.734 | 2.013 | 0.874 | 0.903 | 1.0 | 1.168 | 0.931 | 0.945 | 0.831 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5156
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
lysosome_vacuole
|
— |
RRKKRRFKKP,KKHEAKADNGRREKA
|
43-69
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.100
|
0.130
|
0.025
|
0.142
|
0.307
|
0.600
|
0.390
|
0.031
|
0.517
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007641
|
1.000
|
1.000
|
Hsc_gene_1115.t2
|
Hsc_gene_1115.t1;Hsc_gene_1115.t2
|
— |
Q94225.3 Sulfate permease family protein 3 [Caenorhabditis elegans]
|
KAI3415588.1 STAS domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0055085
|
GO:0008150_0.874|GO:0005575_0.841|GO:0110165_0.840|GO:0016020_0.796|GO:0009987_0.793|GO:0003674_0.767|GO:0071944_0.754|GO:0005886_0.738|GO:0006810_0.683|GO:0051179_0.683|GO:0051234_0.683|GO:0055085_0.628|GO:0005215_0.555|GO:0022857_0.555|GO:0098660_0.517|GO:0015318_0.514|GO:0015698_0.511
|
IPR001902+51-791+|IPR002645+653-792_661-788+|IPR011547+86-600+|IPR036513+631-793_659-790+
|
— |
PF00916+86-600+Sulfate_permease_family|PF01740+661-788+STAS_domain
|
— |
PTHR11814+51-791+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-814
|
8tny_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.665
|
91233.810
|
7.169
|
8.000
|
20.516
|
14.005
|
41.646
|
58.354
|
11.425
|
9.091
|
48.034
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
178.875
|
208.942
|
254.021
|
138.076
|
159.912
|
144.454
|
96.920
|
259.479
|
9.506
|
302.271
|
176.800
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.735
|
-0.769
|
— | — |
-0.567
|
0.743
|
-1.281
|
-5.106
|
— | — | — | — |
No JSON data available for plots.