Hg_chrom3_TN10mRNA_5437
Organism: Heterodera glycines Gene Locus: chr3:6174782-6179292 Feature type: polypeptideProtein Sequence
Length: 776
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 0.989 | 0.562 | 0.489 | 0.924 | 1.123 | 0.721 | 1.418 | 1.317 | 1.341 | 0.586 | 1.364 | 1.718 | 0.892 | 1.604 | 1.418 | 0.845 | 0.82 | 0.991 | 0.985 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5159
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
chloroplast
|
RKEKRKQ
|
36-56
|
0.954
|
5-45
|
0.994
|
1-21
|
0.509
|
0.836
|
5.000
|
5.000
|
0.040
|
0.092
|
0.016
|
0.154
|
0.326
|
0.354
|
0.283
|
0.041
|
0.590
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007643
|
1.000
|
1.000
|
Hsc_gene_1113.t1
|
Hsc_gene_1113.t1;Hsc_gene_1113.t2
|
— |
Q22549.1 Innexin-10 [Caenorhabditis elegans]
|
KAF7632364.1 Innexin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.916|GO:0110165_0.913|GO:0008150_0.811|GO:0009987_0.709|GO:0030054_0.659|GO:0016020_0.575|GO:0051179_0.571|GO:0006810_0.565|GO:0051234_0.565|GO:0065007_0.563|GO:0050789_0.542|GO:0005886_0.539|GO:0071944_0.539|GO:0003674_0.533|GO:0005911_0.526|GO:0070161_0.526|GO:0032501_0.506|GO:0005921_0.503
|
IPR000990+81-494_94-469_99-463_122-133_150-159_179-201_279-293_329-338_353-369+
|
— |
PF00876+99-463+Innexin
|
— |
PTHR11893+81-494+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
494-776
|
1.000
|
1-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
88142.980
|
9.848
|
35.000
|
23.196
|
13.660
|
46.907
|
53.093
|
14.562
|
8.634
|
46.521
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
303.190
|
556.795
|
906.782
|
379.761
|
110.699
|
242.457
|
216.074
|
428.759
|
190.019
|
118.445
|
149.119
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.474
|
-0.689
|
-1.147
|
-1.810
|
1.145
|
— |
0.720
|
-0.847
|
— | — | — | — | — |