Hg_chrom3_TN10mRNA_5438
Organism: Heterodera glycines Gene Locus: chr3:6179612-6181008 Feature type: polypeptideProtein Sequence
Length: 240
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.405 | 0.969 | 0.758 | 1.149 | 0.694 | 1.389 | 0.893 | 0.833 | 1.204 | 1.126 | 1.01 | 1.716 | 1.852 | 0.561 | 0.68 | 1.131 | 0.751 | 0.631 | 2.244 | 0.49 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5160
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.845
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-37
|
0.763
|
0.672
|
0.000
|
0.000
|
0.198
|
0.229
|
0.033
|
0.202
|
0.327
|
0.245
|
0.224
|
0.042
|
0.453
|
0.872
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007644
|
1.000
|
1.000
|
Hsc_gene_1112.t1
|
Hsc_gene_1112.t1
|
— | — |
KAF7634611.1 BTB domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1900449
|
GO:0008150_0.936|GO:0065007_0.801|GO:0009987_0.645|GO:0050789_0.557|GO:0050794_0.541|GO:0005575_0.530|GO:0110165_0.529|GO:0007154_0.502|GO:0023052_0.501
|
IPR005018+67-201+|IPR042789+30-223+
|
— | — | — |
PTHR46902+30-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
26430.390
|
8.298
|
6.000
|
20.000
|
12.917
|
42.083
|
57.917
|
11.667
|
8.333
|
50.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
421.590
|
24.223
|
55.067
|
13.203
|
170.305
|
3156.931
|
21.269
|
339.763
|
4.146
|
423.563
|
243.813
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.961
|
-1.012
|
-1.956
|
3.659
|
4.227
|
-7.206
|
-3.336
|
-3.855
|
— | — | — | — | — |