Hg_chrom3_TN10mRNA_5439
Organism: Heterodera glycines Gene Locus: chr3:6181199-6183255 Feature type: polypeptideProtein Sequence
Length: 215
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 1.19 | 0.423 | 2.566 | 1.318 | 1.431 | 0.775 | 0.465 | 1.137 | 0.943 | 1.268 | 1.368 | 2.067 | 0.537 | 1.519 | 1.063 | 0.305 | 0.634 | 0.716 | 1.094 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5161
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-25
|
0.944
|
1.000
|
1.000
|
1.000
|
0.261
|
0.027
|
0.027
|
0.238
|
0.185
|
0.540
|
0.243
|
0.022
|
0.780
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007645
|
1.000
|
1.000
|
Hsc_gene_1111.t1
|
Hsc_gene_1111.t1
|
— | — |
KAF7635936.1 EGF-like domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000742+108-142_130-141+|IPR053295+97-144+
|
— | — | — |
PTHR47324+97-144+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-215
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.710
|
24866.770
|
8.783
|
13.000
|
26.977
|
13.023
|
46.977
|
53.023
|
16.744
|
10.233
|
43.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
492.292
|
126.859
|
1338.814
|
375.907
|
301.406
|
450.148
|
310.250
|
1073.893
|
56.025
|
620.282
|
378.457
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.172
|
1.430
|
-1.725
|
-0.349
|
0.592
|
-0.527
|
1.154
|
-1.650
|
-3.618
|
— | — | — | — |