SCN Proteipedia

Hg_chrom3_TN10mRNA_5441

Organism: Heterodera glycines Gene Locus: chr3:6190113-6195568 Feature type: polypeptide

Protein Sequence

Length: 1,007

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.716	1.155	0.903	0.616	0.91	1.528	0.556	1.639	1.214	1.315	0.812	2.103	1.407	0.955	1.257	0.908	0.847	0.963	0.917	0.993	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5163	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KVKK,RKVLDVKRELELDERRKNE	—	—	—	—	—	—	0.000	—	—	0.096	0.148	0.013	0.144	0.249	0.406	0.239	0.013	0.738	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003580	1.000	2.000	Hsc_gene_1108.t1;Hsc_gene_1108.t2	Hsc_gene_1107.t1;Hsc_gene_1107.t2;Hsc_gene_1108.t1;Hsc_gene_1108.t2	—	Q02280.2 Potassium voltage-gated channel protein eag [Drosophila melanogaster]	KAI1713398.1 ion transport protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005249\|GO:0006811\|GO:0006813\|GO:0016020\|GO:0055085	GO:0008150_0.952\|GO:0009987_0.878\|GO:0003674_0.855\|GO:0051179_0.820\|GO:0006810_0.811\|GO:0051234_0.811\|GO:0005575_0.704\|GO:0110165_0.704\|GO:0006811_0.689\|GO:0055085_0.683\|GO:0016020_0.670\|GO:0034220_0.666\|GO:0006812_0.663\|GO:0030001_0.660\|GO:0005886_0.646\|GO:0071944_0.646\|GO:0005215_0.645\|GO:0005216_0.645\|GO:0015075_0.645\|GO:0015267_0.645\|GO:0022803_0.645\|GO:0022857_0.645\|GO:0098660_0.641\|GO:0006813_0.632\|GO:0098655_0.632\|GO:0098662_0.627\|GO:0022836_0.622\|GO:0005261_0.620\|GO:0008324_0.620\|GO:0015318_0.607\|GO:0071805_0.607\|GO:0022890_0.601\|GO:0046873_0.601\|GO:0005244_0.593\|GO:0022832_0.593\|GO:0022843_0.590\|GO:0005267_0.585\|GO:0015079_0.585\|GO:0005249_0.584	IPR000014+59-122_69-121+\|IPR000595+550-650_550-665_551-661_570-651+\|IPR000700+81-133+\|IPR001610+82-124+\|IPR003938+206-215_224-231_252-262_263-272_359-369_419-436_445-456_463-472_513-520_630-638+\|IPR003949+17-24_117-128_183-200_295-303_316-325_521-533_651-666_671-685_702-713+\|IPR005821+212-478+\|IPR014710+517-693+\|IPR018490+476-664+\|IPR035965+51-122+\|IPR050818+32-936+	SM00086+82-124+\|SM00100+550-665+	PF00027+570-651+Cyclic_nucleotide-binding_domain\|PF00520+212-478+Ion_transport_protein\|PF13426+59-122+PAS_domain	G3DSA:1.10.1200.260:FF:000003+473-513+Potassium_voltage-gated_channel_subfamily_H_member_1\|G3DSA:1.10.287.70:FF:000084+211-472+Potassium_voltage-gated_channel_protein_eag\|G3DSA:2.60.120.10:FF:000009+517-693+Potassium_voltage-gated_channel_subfamily_H_member_1	PTHR10217+32-936+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	698-1007	1.000	1-697	8iob_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.722	115698.000	8.523	27.500	25.223	12.910	47.666	52.334	14.796	10.427	45.382

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	460.108	1252.914	959.050	405.162	168.623	361.361	300.221	496.359	60.741	488.535	305.195

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.615	-1.766	-1.135	-1.294	1.114	—	—	-0.584	—	—	—	—	—

No JSON data available for plots.

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