Hg_chrom3_TN10mRNA_5447
Organism: Heterodera glycines Gene Locus: chr3:6206147-6206806 Feature type: polypeptideProtein Sequence
Length: 126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.554 | 1.292 | 1.154 | 0.821 | 1.587 | 0.814 | 0.472 | 1.19 | 1.058 | 1.18 | 0.962 | 1.401 | 1.323 | 0.916 | 1.458 | 0.907 | 1.041 | 1.323 | 0.0 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5169
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.085
|
0.971
|
0.002
|
0.145
|
0.055
|
0.033
|
0.049
|
0.011
|
0.032
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007650
|
1.000
|
1.000
|
Hsc_gene_1102.t1
|
Hsc_gene_1102.t1
|
— | — |
KAH7693353.1 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [Aphelenchus avenae]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006450
|
GO:0005575_0.906|GO:0110165_0.897|GO:0005622_0.845|GO:0005737_0.801|GO:0016020_0.793|GO:0043226_0.787|GO:0043229_0.775|GO:0043227_0.746|GO:0043231_0.729|GO:0008150_0.580|GO:0005739_0.571|GO:0009987_0.515
|
IPR003837+18-110_49-106+|IPR036113+22-110+
|
— |
PF02686+49-106+Glu-tRNAGln_amidotransferase_C_subunit
|
— |
PTHR15004+18-110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
120-126
|
1.000
|
1-119
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
14368.340
|
5.698
|
-1.500
|
31.746
|
8.730
|
53.175
|
46.825
|
15.873
|
15.873
|
49.206
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
860.886
|
235.477
|
424.414
|
675.722
|
905.753
|
779.567
|
706.121
|
592.186
|
1370.322
|
1118.918
|
1226.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.619
|
1.384
|
0.781
|
0.390
|
-0.201
|
— |
-0.501
|
0.396
|
— | — | — | — | — |
No JSON data available for plots.