Hg_chrom3_TN10mRNA_5448
Organism: Heterodera glycines Gene Locus: chr3:6208267-6209271 Feature type: polypeptideProtein Sequence
Length: 210
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.664 | 1.107 | 0.866 | 1.314 | 1.032 | 0.733 | 0.737 | 0.952 | 1.058 | 2.124 | 0.577 | 1.401 | 2.249 | 0.824 | 0.486 | 1.156 | 0.546 | 0.794 | 1.465 | 1.12 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5170
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — |
1-20
|
0.991
|
1.000
|
2.000
|
2.000
|
0.043
|
0.167
|
0.022
|
0.119
|
0.442
|
0.825
|
0.653
|
0.038
|
0.730
|
0.237
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007651
|
1.000
|
1.000
|
Hsc_gene_1101.t1
|
Hsc_gene_1101.t1
|
— |
P61228.1 TM2 domain-containing protein C02F5.13 [Caenorhabditis elegans]
|
KAI1729327.1 TM2 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.945|GO:0009987_0.893|GO:0065007_0.825|GO:0050789_0.809|GO:0023052_0.750|GO:0007154_0.746|GO:0050896_0.681|GO:0050794_0.654|GO:0051716_0.650|GO:0007165_0.607|GO:0048518_0.502
|
IPR007829+145-192+|IPR050932+68-207+
|
— |
PF05154+145-192+TM2_domain
|
— |
PTHR21016+68-207+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-210
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
23758.500
|
4.478
|
-8.000
|
19.048
|
15.714
|
38.095
|
61.905
|
8.095
|
10.952
|
46.190
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
986.056
|
555.490
|
516.455
|
538.915
|
606.022
|
503.312
|
466.406
|
550.789
|
183.733
|
2774.673
|
1664.270
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.335
|
-0.181
|
0.170
|
— |
-0.253
|
— | — | — |
-4.013
|
— | — | — | — |