Hg_chrom3_TN10mRNA_5449
Organism: Heterodera glycines Gene Locus: chr3:6209299-6211088 Feature type: polypeptideProtein Sequence
Length: 256
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.409 | 1.908 | 0.71 | 0.404 | 0.716 | 0.801 | 0.558 | 0.977 | 1.042 | 1.32 | 0.947 | 2.068 | 1.302 | 1.427 | 1.754 | 1.004 | 0.961 | 1.125 | 0.901 | 0.804 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5171
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
44-64
|
0.993
|
14-64
|
1.000
|
— | — |
0.000
|
— | — |
0.121
|
0.880
|
0.557
|
0.148
|
0.027
|
0.048
|
0.019
|
0.022
|
0.054
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007652
|
1.000
|
1.000
|
Hsc_gene_1100.t1
|
Hsc_gene_1100.t1
|
— |
Q8R2R6.2 Mitochondrial ribosome-associated GTPase 1 [Mus musculus]
|
KAI1729185.1 50S ribosome-binding GTPase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005525
|
GO:0005575_0.859|GO:0110165_0.850|GO:0005622_0.814|GO:0016020_0.753|GO:0043226_0.748|GO:0043229_0.741|GO:0043227_0.703|GO:0008150_0.693|GO:0043231_0.693|GO:0009987_0.630|GO:0003674_0.624|GO:0005737_0.548
|
IPR006073+191-253_192-212_246-256+|IPR027417+68-253_79-253+
|
— |
PF01926+191-253+50S_ribosome-binding_GTPase
|
G3DSA:3.40.50.300:FF:000876+68-253+Mitochondrial_GTPase_1
|
PTHR45782+54-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2
|
1.000
|
3-256
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.808
|
29464.100
|
10.700
|
19.500
|
25.000
|
10.547
|
49.219
|
50.781
|
16.797
|
8.203
|
49.219
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
629.779
|
722.655
|
595.904
|
496.400
|
583.622
|
596.380
|
871.080
|
697.233
|
642.587
|
562.113
|
596.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.508
|
-0.679
|
-0.155
|
0.202
|
— |
0.556
|
— |
0.464
|
— | — | — | — | — |
No JSON data available for plots.