Hg_chrom3_TN10mRNA_5451
Organism: Heterodera glycines Gene Locus: chr3:6211683-6213043 Feature type: polypeptideProtein Sequence
Length: 199
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.351 | 1.052 | 0.548 | 0.347 | 1.089 | 1.031 | 0.538 | 1.256 | 1.34 | 1.154 | 0.914 | 1.774 | 2.373 | 0.773 | 2.256 | 0.861 | 0.824 | 0.838 | 1.546 | 1.478 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5173
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — |
79-99
|
0.997
|
45-65
|
0.996
|
— | — |
0.000
|
— | — |
0.171
|
0.785
|
0.070
|
0.174
|
0.235
|
0.061
|
0.086
|
0.092
|
0.118
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q9CQS2.1 H/ACA ribonucleoprotein complex subunit 3 [Mus musculus]
|
KAH7728330.1 H/ACA ribonucleoprotein complex subunit 3 [Aphelenchus avenae]
|
No
|
-0.600
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0001522|GO:0030515|GO:0042254
|
GO:0008150_0.838|GO:0009987_0.795|GO:0005575_0.683|GO:0110165_0.681|GO:0071840_0.640|GO:0016020_0.638|GO:0005622_0.611|GO:0043226_0.592|GO:0043229_0.587|GO:0008152_0.577|GO:0009058_0.567|GO:0044237_0.565|GO:0044238_0.564|GO:0043170_0.556|GO:0044249_0.556|GO:0043227_0.552|GO:0043231_0.548|GO:0009059_0.545|GO:0006139_0.523|GO:0034654_0.511|GO:0090304_0.508|GO:0141187_0.504
|
IPR007264+1-50_3-50+|IPR036756+3-50+
|
— |
PF04135+3-50+Nucleolar_RNA-binding_protein,_Nop10p_family
|
— |
PTHR13305+1-50+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-199
|
9qb3_j
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
24115.940
|
10.556
|
17.500
|
29.146
|
18.090
|
48.744
|
51.256
|
19.598
|
9.548
|
36.683
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
steelblue
|
1440.869
|
1463.518
|
1471.675
|
3010.790
|
3051.191
|
2224.462
|
1612.009
|
986.490
|
999.114
|
371.918
|
640.716
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.221
|
0.904
|
1.141
|
— |
-0.440
|
-0.456
|
-1.277
|
0.850
|
— | — |
3.714
|
— | — |
No JSON data available for plots.