Hg_chrom3_TN10mRNA_5453
Organism: Heterodera glycines Gene Locus: chr3:6214685-6215595 Feature type: polypeptideProtein Sequence
Length: 148
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.707 | 1.1 | 0.86 | 0.466 | 0.788 | 1.04 | 0.322 | 0.676 | 1.652 | 1.552 | 0.819 | 0.795 | 1.689 | 0.91 | 0.965 | 1.062 | 1.108 | 1.433 | 0.52 | 1.391 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5175
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.060
|
0.022
|
0.440
|
0.279
|
0.691
|
0.430
|
0.108
|
0.110
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007654
|
2.000
|
0.000
|
0.000
|
— | — |
Q54UU1.1 Trafficking protein particle complex subunit 4 [Dictyostelium discoideum]
|
KAH7709287.1 Protein F36D4.2 [Aphelenchus avenae]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016192|GO:0030008
|
GO:0005575_0.920|GO:0110165_0.855|GO:0005622_0.807|GO:0005737_0.797|GO:0008150_0.787|GO:0009987_0.723|GO:0016020_0.671|GO:0043226_0.642|GO:0043229_0.627|GO:0051179_0.615|GO:0006810_0.612|GO:0051234_0.612|GO:0043227_0.609|GO:0043231_0.597|GO:0016192_0.561
|
IPR007233+1-141_3-139_3-141+|IPR011012+1-141+
|
SM01399+3-141+
|
PF04099+3-139+Sybindin-like_family
|
G3DSA:3.30.450.70:FF:000017+1-141+Sybindin-like_family_protein
|
PTHR23249+1-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-148
|
7b70_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.651
|
16882.600
|
7.838
|
2.000
|
20.946
|
12.838
|
43.919
|
56.081
|
11.486
|
9.459
|
47.973
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
421.320
|
199.506
|
254.406
|
389.783
|
549.254
|
548.667
|
611.835
|
508.074
|
227.750
|
524.391
|
397.259
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.829
|
0.725
|
0.462
|
— | — | — |
0.410
|
— | — | — | — | — |
No JSON data available for plots.