Hg_chrom3_TN10mRNA_5455
Organism: Heterodera glycines Gene Locus: chr3:6220201-6221531 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 1.163 | 1.08 | 0.323 | 0.573 | 0.561 | 0.484 | 1.719 | 2.014 | 1.098 | 0.805 | 2.206 | 1.563 | 1.142 | 1.084 | 1.295 | 0.615 | 1.184 | 1.442 | 0.46 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5177
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.629
|
0.443
|
0.017
|
0.502
|
0.184
|
0.094
|
0.046
|
0.043
|
0.153
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007655
|
1.000
|
1.000
|
Hsc_gene_1098.t1
|
Hsc_gene_1098.t1
|
— |
Q9LW62.1 Casein kinase 1-like protein 10 [Arabidopsis thaliana]
|
KAF7636149.1 Protein kinase domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.858|GO:0110165_0.858|GO:0005622_0.747|GO:0008150_0.744|GO:0003674_0.664|GO:0016020_0.652|GO:0009987_0.651|GO:0005737_0.649|GO:0043226_0.631|GO:0043229_0.631|GO:0003824_0.585|GO:0043227_0.531|GO:0016740_0.519|GO:0065007_0.508|GO:0050896_0.502
|
IPR000719+1-320_166-312+|IPR011009+161-279+|IPR050235+85-304+
|
— |
PF00069+166-312+Protein_kinase_domain
|
— |
PTHR11909+85-304+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-320
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
35960.780
|
9.052
|
9.500
|
23.438
|
12.500
|
43.438
|
56.562
|
14.062
|
9.375
|
50.312
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
558.538
|
15.211
|
10.277
|
44.181
|
225.992
|
1712.408
|
79.687
|
1568.966
|
0.000
|
1072.334
|
612.762
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.403
|
2.219
|
2.324
|
2.936
|
-4.417
|
— |
-4.154
|
-8.949
|
6.322
|
— | — |
6.996
|
No JSON data available for plots.