Hg_chrom3_TN10mRNA_5456
Organism: Heterodera glycines Gene Locus: chr3:6222568-6223196 Feature type: polypeptideProtein Sequence
Length: 136
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.256 | 0.0 | 0.134 | 4.31 | 0.0 | 0.754 | 5.777 | 0.0 | 0.327 | 0.795 | 0.334 | 1.73 | 0.408 | 1.131 | 0.0 | 0.735 | 0.121 | 0.668 | 0.0 | 0.865 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5178
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-21
|
1.000
|
1.000
|
0.000
|
0.000
|
0.619
|
0.468
|
0.017
|
0.258
|
0.408
|
0.071
|
0.123
|
0.005
|
0.090
|
0.494
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007656
|
1.000
|
1.000
|
Hsc_gene_1097.t1
|
Hsc_gene_1097.t1
|
— | — | — |
MBN2405095
|
0.470
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-136
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
11447.970
|
7.485
|
2.000
|
2.941
|
4.412
|
11.765
|
88.235
|
2.206
|
0.735
|
80.147
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
109.186
|
86.111
|
3.791
|
2.191
|
2.933
|
630.936
|
16.613
|
360.339
|
5.688
|
59.831
|
36.627
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.733
|
-5.436
|
— | — |
7.780
|
-5.241
|
-0.923
|
-4.298
|
— | — | — | — | — |