SCN Proteipedia

Hg_chrom3_TN10mRNA_5457

Organism: Heterodera glycines Gene Locus: chr3:6224111-6229439 Feature type: polypeptide

Protein Sequence

Length: 1,094

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.903	0.872	1.097	0.662	1.143	0.797	0.871	0.594	1.544	1.198	0.845	1.613	1.193	0.826	1.157	0.836	1.019	1.219	0.844	0.726	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5179	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KKKLRIKKREKKKED,KKREKKKEDLEELKKEMK,KSESKTNGKAKNVKKKLRIKKREKKKE	—	—	—	—	—	—	0.000	—	—	0.095	0.131	0.009	0.231	0.476	0.502	0.355	0.005	0.741	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007657	1.000	1.000	Hsc_gene_1096.t1	Hsc_gene_1096.t1	—	P13607.3 Sodium/potassium-transporting ATPase subunit alpha [Drosophila melanogaster]	KAI1713402.1 e1-E2 ATPase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005524\|GO:0006813\|GO:0008556\|GO:0016020\|GO:0016887	GO:0008150_0.881\|GO:0005575_0.872\|GO:0110165_0.866\|GO:0016020_0.805\|GO:0071944_0.785\|GO:0005886_0.778\|GO:0006810_0.776\|GO:0051179_0.776\|GO:0051234_0.776\|GO:0009987_0.774\|GO:0003674_0.722\|GO:0055085_0.701\|GO:0006811_0.684\|GO:0034220_0.645\|GO:0065007_0.580\|GO:0005215_0.578\|GO:0022857_0.578\|GO:0006812_0.573\|GO:0098660_0.570\|GO:0030001_0.563\|GO:0015075_0.538\|GO:0098655_0.536\|GO:0098662_0.531\|GO:0043226_0.511\|GO:0008324_0.506\|GO:0006814_0.502\|GO:0015318_0.501	IPR001757+203-459_760-876+\|IPR004014+109-183_110-178+\|IPR005775+94-1094_129-1091+\|IPR006068+870-1078+\|IPR008250+233-340+\|IPR018303+443-449+\|IPR023214+438-826+\|IPR023298+108-1085+\|IPR023299+450-666_451-665+\|IPR036412+439-890+\|IPR044492+422-838+\|IPR050510+73-1093+	SM00831+109-183+	PF00122+231-421+E1-E2_ATPase\|PF00689+870-1078+Cation_transporting_ATPase,_C-terminus\|PF00690+110-178+Cation_transporter/ATPase,_N-terminus\|PF13246+496-591+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000038+827-1088+Sodium/potassium-transporting_ATPase_subunit_alpha\|G3DSA:1.20.1110.10:FF:000095+316-459+Sodium/potassium-transporting_ATPase_subunit_alpha-1\|G3DSA:2.70.150.10:FF:000003+210-343+Sodium/potassium-transporting_ATPase_subunit_alpha\|G3DSA:3.40.1110.10:FF:000001+451-665+Sodium/potassium-transporting_ATPase_subunit_alpha\|G3DSA:3.40.50.1000:FF:000004+660-826+Sodium/potassium-transporting_ATPase_subunit_alpha	PTHR43294+73-1093+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-106	1.000	107-1094	1mo8_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.544	121195.340	5.375	-11.500	25.320	9.049	44.241	55.759	12.431	12.888	51.188

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	orange	1042.949	2929.133	3134.022	880.250	314.508	380.256	350.762	1220.289	1082.285	297.729	633.967

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.131	-1.872	-1.724	-1.516	0.288	—	1.580	-1.657	—	—	—	—	—

No JSON data available for plots.

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