SCN Proteipedia

Hg_chrom3_TN10mRNA_5458

Organism: Heterodera glycines Gene Locus: chr3:6229330-6233920 Feature type: polypeptide

Protein Sequence

Length: 839

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.887	1.026	0.954	0.534	1.708	1.314	0.482	1.192	1.404	1.289	1.192	1.683	0.828	0.436	1.289	1.192	0.684	0.614	0.825	1.052	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5180	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRYFLKKDKTDRGKTKEKK,KKEKAAQREKIALEKKKLE,KKDKTDRGKTKEKKEKAAQREKIALEKKK	—	—	—	—	—	—	0.000	—	—	0.645	0.084	0.014	0.556	0.165	0.071	0.149	0.012	0.069	0.023

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003582	1.000	2.000	Hsc_gene_1095.t1;Hsc_gene_1095.t2	Hsc_gene_1095.t1;Hsc_gene_1095.t2;Hsc_gene_1237.t1	—	O02328.2 Eukaryotic translation initiation factor 3 subunit C [Caenorhabditis elegans]	KAF7634106.1 Eukaryotic translation initiation factor 3 subunit C [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0003743\|GO:0005852\|GO:0006413\|GO:0031369	GO:0005575_0.927\|GO:0110165_0.924\|GO:0005622_0.878\|GO:0008150_0.827\|GO:0009987_0.788\|GO:0005737_0.767\|GO:0003674_0.739\|GO:0005488_0.702\|GO:0008152_0.650\|GO:0044238_0.648\|GO:0043170_0.642\|GO:0009058_0.634\|GO:0044237_0.634\|GO:0044249_0.620\|GO:0009059_0.613\|GO:0065007_0.608\|GO:0010467_0.606\|GO:0019538_0.598\|GO:0050789_0.590\|GO:0097159_0.588\|GO:0032991_0.577\|GO:0003676_0.569\|GO:0050794_0.568\|GO:0003723_0.557\|GO:0006412_0.549\|GO:0006414_0.549\|GO:0006413_0.541	IPR000717+608-784_710-781_713-799+\|IPR008905+47-476_481-639+\|IPR027516+1-801_1-839+\|IPR036390+710-784+	SM00088+713-799+	PF01399+710-781+PCI_domain\|PF05470+47-476_481-639+Eukaryotic_translation_initiation_factor_3_subunit_8_N-terminus	—	PTHR13937+1-801+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-59;115-256;830-839	2.000	60-114;257-829	9kzx_3c	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.505	96526.480	6.441	-1.000	32.062	10.012	54.112	45.888	16.567	15.495	41.716

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	3172.939	1528.096	2146.773	3475.000	4228.073	3923.726	3037.251	1706.644	5835.688	1987.755	3636.869

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.262	1.048	0.803	0.251	—	-0.359	-1.307	0.974	1.443	—	—	—	—

No JSON data available for plots.

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