Hg_chrom3_TN10mRNA_5459
Organism: Heterodera glycines Gene Locus: chr3:6234098-6237884 Feature type: polypeptideProtein Sequence
Length: 742
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.081 | 1.442 | 0.49 | 0.883 | 0.898 | 2.557 | 0.963 | 1.752 | 0.479 | 0.947 | 0.735 | 1.506 | 1.123 | 1.14 | 0.88 | 1.559 | 1.083 | 0.449 | 0.104 | 0.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5181
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,KRRLRVAKRGEKSRRN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.948
|
0.058
|
0.008
|
0.251
|
0.012
|
0.016
|
0.017
|
0.045
|
0.050
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007658
|
1.000
|
1.000
|
Hsc_gene_1094.t1
|
Hsc_gene_1094.t1
|
— | — |
KAI1732550.1 zinc finger protein 13 [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+209-231_211-231_477-499_479-499_550-572_550-577_575-597_575-599_577-597_602-624_604-624+|IPR036236+478-572_575-624+
|
SM00355+209-231_477-499_550-572_575-597_602-624+
|
PF00096+575-597+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000100+574-598+Zinc_finger_45-like
|
PTHR24394+16-660+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-146;311-543;623-742
|
2.000
|
147-310;544-622
|
2i13_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.940
|
79909.580
|
8.299
|
21.000
|
20.755
|
8.491
|
54.447
|
45.553
|
12.668
|
8.086
|
55.256
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
303.561
|
253.109
|
222.745
|
149.240
|
443.916
|
987.842
|
900.917
|
311.668
|
15.009
|
90.784
|
58.309
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.416
|
-0.899
|
-0.467
|
1.540
|
1.169
|
— |
-1.774
|
1.676
|
— | — | — | — |
6.856
|
No JSON data available for plots.