Hg_chrom3_TN10mRNA_5461
Organism: Heterodera glycines Gene Locus: chr3:6242151-6246071 Feature type: polypeptideProtein Sequence
Length: 419
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.443 | 0.651 | 2.387 | 0.955 | 0.673 | 0.881 | 1.551 | 1.114 | 1.29 | 0.579 | 0.702 | 1.26 | 1.01 | 0.974 | 0.955 | 1.017 | 0.832 | 0.367 | 1.053 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5182
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
— |
12-39
|
0.914
|
— | — |
1-16
|
0.656
|
0.997
|
0.000
|
0.000
|
0.177
|
0.140
|
0.011
|
0.316
|
0.099
|
0.059
|
0.158
|
0.081
|
0.423
|
0.873
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007659
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAH7719741.1 CRE-MUA-3 protein [Aphelenchus avenae]
|
No
|
-0.370
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.870|GO:0110165_0.870|GO:0008150_0.651|GO:0030054_0.599|GO:0009987_0.585|GO:0070161_0.553|GO:0030055_0.540|GO:0030056_0.540
|
IPR000082+56-178+|IPR000152+215-226_322-333+|IPR000742+140-193_197-236_200-245_304-343_307-350+|IPR001881+141-193_197-245_304-350+|IPR018097+304-331+|IPR049883+198-231_304-344+
|
SM00179+141-193_197-245_304-350+|SM00181+140-193_200-245_307-350+|SM00200+56-178+
|
PF07645+198-231_304-344+Calcium-binding_EGF_domain
|
— |
PTHR24039+146-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-419
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
45940.500
|
6.880
|
3.500
|
21.002
|
11.695
|
42.721
|
57.279
|
11.695
|
9.308
|
55.609
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
skyblue
|
70.389
|
9.094
|
24.261
|
23.749
|
19.777
|
190.501
|
257.366
|
176.613
|
4.660
|
41.445
|
25.680
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.185
|
1.247
|
— | — |
3.278
|
0.444
|
— |
0.685
|
— | — | — | — | — |