Hg_chrom3_TN10mRNA_5464
Organism: Heterodera glycines Gene Locus: chr3:6255847-6256957 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.954 | 1.312 | 0.186 | 1.238 | 0.171 | 0.92 | 0.366 | 1.538 | 1.595 | 2.287 | 0.311 | 1.508 | 2.564 | 0.493 | 0.733 | 1.026 | 0.673 | 1.321 | 1.972 | 1.207 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5185
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.005
|
— | — |
0.143
|
0.069
|
0.010
|
0.124
|
0.134
|
0.111
|
0.119
|
0.032
|
0.775
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003583
|
2.000
|
1.000
|
Hsc_gene_5743.t1
|
— | — |
Q9VML9.4 Trissin receptor [Drosophila melanogaster]
|
KAI1730617.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.877|GO:0009987_0.798|GO:0005575_0.756|GO:0110165_0.756|GO:0065007_0.733|GO:0003674_0.706|GO:0050896_0.703|GO:0050789_0.687|GO:0016020_0.678|GO:0050794_0.668|GO:0023052_0.654|GO:0007154_0.650|GO:0051716_0.649|GO:0005886_0.612|GO:0071944_0.612|GO:0007165_0.608|GO:0007186_0.602|GO:0060089_0.569|GO:0038023_0.567|GO:0005488_0.556|GO:0004888_0.513
|
IPR000276+1-160_5-26_53-75_89-110+|IPR017452+1-161+
|
— |
PF00001+1-160+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+1-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-195
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
22347.760
|
9.018
|
10.000
|
10.769
|
18.974
|
31.282
|
68.718
|
8.718
|
2.051
|
44.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
cyan
|
20.694
|
11.351
|
26.384
|
22.583
|
40.526
|
18.789
|
63.804
|
11.065
|
1.382
|
16.562
|
10.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.985
|
0.855
|
— |
0.811
|
-1.094
|
1.774
|
— |
2.674
|
— |
4.358
|
— | — | — |
No JSON data available for plots.