SCN Proteipedia

Hg_chrom3_TN10mRNA_5465

Organism: Heterodera glycines Gene Locus: chr3:6260325-6272694 Feature type: polypeptide

Protein Sequence

Length: 2,545

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.927	1.133	0.893	0.867	1.107	1.451	0.491	1.198	1.257	1.577	0.685	1.248	1.201	0.816	1.435	0.982	0.876	0.857	0.877	0.682	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5186	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.935

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	RKRRR,RKRAGKSKRCDSHRKMRA	—	—	—	—	—	—	0.000	—	—	0.288	0.131	0.033	0.516	0.280	0.582	0.472	0.039	0.426	0.044

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007660	1.000	1.000	Hsc_gene_1092.t1	Hsc_gene_1091.t1;Hsc_gene_1092.t1	—	O75165.5 DnaJ homolog subfamily C member 13 [Homo sapiens]	KAI1707730.1 dnaJ domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0007032\|GO:2000641	GO:0005575_0.903\|GO:0110165_0.899\|GO:0008150_0.888\|GO:0009987_0.837\|GO:0016020_0.816\|GO:0005622_0.801\|GO:0005737_0.729\|GO:0043226_0.720\|GO:0071944_0.705\|GO:0043229_0.694\|GO:0005886_0.688\|GO:0043227_0.669\|GO:0071840_0.641\|GO:0016043_0.639\|GO:0043231_0.635\|GO:0051179_0.620\|GO:0065007_0.620\|GO:0032501_0.616\|GO:0032502_0.607\|GO:0006810_0.598\|GO:0051234_0.598\|GO:0050789_0.596\|GO:0051641_0.561\|GO:0050794_0.550\|GO:0006996_0.541\|GO:0051649_0.524\|GO:0005773_0.516\|GO:0016192_0.510\|GO:0012505_0.508	IPR001623+1409-1470_1410-1478_1415-1466_1428-1471+\|IPR011989+1502-1736_2274-2474+\|IPR016024+1552-2445_2008-2455+\|IPR025640+1055-1105+\|IPR035445+1040-1124_1046-1102+\|IPR036869+1401-1472_1407-1474+\|IPR044978+1800-2529+\|IPR045802+15-913+	SM00271+1409-1470+	PF00226+1428-1471+DnaJ_domain\|PF14237+1055-1105+GYF_domain_2\|PF19432+15-913+DNAJ_protein_RME-8_N-terminal	G3DSA:1.10.287.110:FF:000007+1403-1472+DnaJ_(Hsp40)_homolog,_subfamily_C,_member_13	PTHR36983+1800-2529+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1753-1800;2481-2545	2.000	1-1752;1801-2480	2och_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.623	288865.190	7.465	30.500	25.501	10.177	48.251	51.749	13.949	11.552	46.523

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkgrey	3975.935	5057.394	2647.720	2310.443	2502.667	2824.147	3703.991	2274.225	2391.983	7605.510	5371.141

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.164	-1.268	-0.087	—	0.189	0.401	-0.418	0.846	—	—	—	—	—

No JSON data available for plots.

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