Hg_chrom3_TN10mRNA_5466
Organism: Heterodera glycines Gene Locus: chr3:6273092-6276115 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 1.079 | 0.97 | 0.88 | 0.928 | 0.773 | 0.939 | 2.552 | 1.289 | 1.348 | 0.668 | 0.546 | 1.611 | 1.205 | 1.468 | 0.829 | 0.418 | 0.879 | 1.071 | 1.024 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5187
|
— | — |
1.556
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.570
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.734
|
0.128
|
0.065
|
0.583
|
0.038
|
0.063
|
0.052
|
0.033
|
0.036
|
0.105
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007661
|
1.000
|
1.000
|
Hsc_gene_1090.t1
|
— | — |
Q4SFA0.1 Histone deacetylase 3 [Tetraodon nigroviridis]
|
KAI3415623.1 Histone deacetylase 3 [Globodera pallida]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004407
|
GO:0008150_0.942|GO:0005575_0.794|GO:0003674_0.792|GO:0110165_0.790|GO:0009987_0.771|GO:0005622_0.724|GO:0016020_0.713|GO:0043226_0.670|GO:0043229_0.659|GO:0043227_0.638|GO:0043231_0.631|GO:0008152_0.606|GO:0065007_0.570|GO:0071840_0.570|GO:0003824_0.563|GO:0050789_0.560|GO:0005737_0.557|GO:0016043_0.557|GO:0044237_0.537|GO:0009058_0.533|GO:0043170_0.531|GO:0005634_0.527|GO:0005488_0.523|GO:0044238_0.520|GO:0006325_0.519|GO:0050794_0.517|GO:0044249_0.503
|
IPR000286+133-156_165-180_271-281+|IPR003084+1-215_26-43_59-77_90-107_111-131_152-168_249-428+|IPR023696+7-394+|IPR023801+24-335+|IPR037138+4-401+|IPR050284+12-385+
|
— |
PF00850+24-335+Histone_deacetylase_domain
|
— |
PTHR10625+12-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-431
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
48923.840
|
8.018
|
14.000
|
27.610
|
15.777
|
43.619
|
56.381
|
16.705
|
10.905
|
47.332
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
452.055
|
1214.697
|
723.920
|
565.297
|
476.195
|
452.811
|
596.628
|
563.120
|
194.644
|
109.508
|
145.995
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.977
|
-1.241
|
-0.248
|
-0.278
|
— |
0.408
|
— | — | — | — | — | — | — |
No JSON data available for plots.