Hg_chrom3_TN10mRNA_5470
Organism: Heterodera glycines Gene Locus: chr3:6295919-6296867 Feature type: polypeptideProtein Sequence
Length: 159
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.439 | 1.024 | 0.8 | 0.217 | 2.725 | 1.613 | 0.674 | 0.943 | 0.559 | 0.68 | 1.525 | 2.59 | 0.699 | 0.847 | 2.31 | 1.078 | 0.722 | 0.191 | 0.484 | 0.74 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5191
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
KHKR,KRSFSGILSKLMPRKKSY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.467
|
0.322
|
0.022
|
0.600
|
0.168
|
0.211
|
0.092
|
0.063
|
0.664
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007664
|
1.000
|
1.000
|
Hsc_gene_1086.t1
|
Hsc_gene_1086.t1;Hsc_gene_1086.t2
|
— | — |
KAI3415626.1 hypothetical protein GPALN_005224 [Globodera pallida]
|
WP_105928780
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR38608+1-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-159
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
18911.980
|
8.032
|
2.500
|
44.025
|
7.547
|
66.667
|
33.333
|
23.270
|
20.755
|
36.478
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
407.243
|
121.725
|
260.211
|
205.711
|
185.108
|
394.892
|
88.399
|
1599.436
|
242.819
|
528.769
|
406.219
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
0.620
|
— | — |
1.109
|
-2.150
|
1.927
|
-4.043
|
— | — | — | — | — |
No JSON data available for plots.