Hg_chrom3_TN10mRNA_5477
Organism: Heterodera glycines Gene Locus: chr3:6318223-6320503 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 1.004 | 0.567 | 0.248 | 0.959 | 0.861 | 0.6 | 0.959 | 1.439 | 1.847 | 0.836 | 1.552 | 2.665 | 0.876 | 1.126 | 0.959 | 0.865 | 0.618 | 2.029 | 0.776 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5198
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.303
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
15-55
|
0.888
|
— | — | — | — |
0.000
|
— | — |
0.140
|
0.195
|
0.025
|
0.180
|
0.857
|
0.243
|
0.485
|
0.013
|
0.207
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007667
|
1.000
|
1.000
|
Hsc_gene_1083.t1
|
Hsc_gene_1083.t1
|
— |
Q20800.2 Lysophosphatidylinositol acyltransferase 10 [Caenorhabditis elegans]
|
KAH7730486.1 ACL-9 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746
|
GO:0008150_0.884|GO:0005575_0.848|GO:0009987_0.844|GO:0110165_0.841|GO:0016020_0.787|GO:0005622_0.733|GO:0071944_0.727|GO:0043226_0.723|GO:0005886_0.722|GO:0043229_0.698|GO:0003674_0.694|GO:0005737_0.678|GO:0043227_0.658|GO:0043231_0.647|GO:0005773_0.594|GO:0008152_0.591|GO:0044237_0.578|GO:0044238_0.578|GO:0012505_0.567|GO:0003824_0.548|GO:0006629_0.533|GO:0016740_0.528|GO:0044255_0.528|GO:0016746_0.512|GO:0006793_0.504|GO:0006796_0.504
|
IPR002123+77-235_90-214+|IPR032098+248-309+
|
SM00563+90-214+
|
PF01553+77-235+Acyltransferase|PF16076+248-309+Acyltransferase_C-terminus
|
— |
PTHR10983+17-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
395-417
|
1.000
|
1-394
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.772
|
48396.540
|
9.735
|
13.000
|
21.823
|
16.787
|
41.487
|
58.513
|
12.950
|
8.873
|
40.288
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
1072.649
|
1327.316
|
923.356
|
1033.584
|
998.253
|
1117.012
|
744.209
|
1405.551
|
910.027
|
1179.341
|
1063.921
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.752
|
-0.498
|
0.270
|
— | — |
-0.579
|
— |
-0.779
|
— | — | — | — | — |
No JSON data available for plots.