Hg_chrom3_TN10mRNA_5479
Organism: Heterodera glycines Gene Locus: chr3:6327740-6331546 Feature type: polypeptideProtein Sequence
Length: 696
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 1.203 | 0.81 | 0.248 | 1.102 | 1.105 | 0.924 | 1.221 | 1.309 | 1.048 | 0.805 | 1.69 | 1.237 | 1.022 | 0.968 | 1.211 | 0.919 | 1.11 | 0.663 | 0.718 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5200
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.873
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KKRP
|
31-67
|
0.942
|
— | — | — | — |
0.000
|
— | — |
0.087
|
0.050
|
0.007
|
0.153
|
0.310
|
0.572
|
0.516
|
0.010
|
0.812
|
0.195
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007669
|
1.000
|
1.000
|
Hsc_gene_1081.t1
|
Hsc_gene_1081.t1
|
— |
P07314.4 Glutathione hydrolase 1 proenzyme [Rattus norvegicus]
|
KAI1722769.1 gamma-glutamyltranspeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006751|GO:0036374
|
GO:0005575_0.894|GO:0110165_0.887|GO:0016020_0.755|GO:0008150_0.739|GO:0009987_0.632|GO:0003674_0.627|GO:0043226_0.536|GO:0071944_0.513|GO:0008152_0.503
|
IPR000101+46-688+|IPR029055+151-688+|IPR043137+499-696+|IPR043138+386-493+
|
— |
PF01019+170-688+Gamma-glutamyltranspeptidase
|
G3DSA:1.10.246.130:FF:000005+389-494+Gamma-glutamyltranspeptidase_1,_putative|G3DSA:3.60.20.40:FF:000006+498-696+Protein_CBG05566
|
PTHR11686+46-688+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;67-164;695-696
|
2.000
|
30-66;165-694
|
4gdx_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
76554.890
|
6.653
|
1.500
|
23.563
|
10.201
|
47.126
|
52.874
|
12.500
|
11.063
|
52.299
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
2744.004
|
454.359
|
1855.208
|
5827.312
|
5711.274
|
5042.432
|
1821.504
|
2032.712
|
2771.258
|
1397.272
|
1986.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.799
|
3.544
|
1.760
|
— |
-0.165
|
-1.459
|
-1.420
|
— | — | — | — | — | — |
No JSON data available for plots.