Hg_chrom3_TN10mRNA_5481
Organism: Heterodera glycines Gene Locus: chr3:6337593-6341833 Feature type: polypeptideProtein Sequence
Length: 754
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.74 | 1.265 | 1.037 | 0.503 | 1.083 | 0.918 | 0.758 | 1.194 | 0.796 | 1.183 | 0.723 | 2.184 | 1.695 | 0.842 | 1.326 | 1.175 | 0.826 | 0.824 | 1.734 | 1.014 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5202
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.605
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KRRR
|
— | — | — | — |
1-23
|
0.912
|
0.986
|
1.000
|
1.000
|
0.109
|
0.026
|
0.006
|
0.256
|
0.134
|
0.638
|
0.510
|
0.198
|
0.851
|
0.190
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001955
|
1.000
|
3.000
|
Hsc_gene_1079.t1;Hsc_gene_1079.t2;Hsc_gene_1079.t3
|
Hsc_gene_1079.t2
|
— |
P21836.1 Acetylcholinesterase [Mus musculus]
|
KAF7633302.1 Carboxylic ester hydrolase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.820|GO:0003674_0.771|GO:0005575_0.691|GO:0110165_0.691|GO:0009987_0.683|GO:0016020_0.590|GO:0003824_0.580|GO:0016787_0.540|GO:0008152_0.534|GO:0005622_0.519|GO:0065007_0.513|GO:0016788_0.509
|
IPR002018+97-416+|IPR019826+271-286+|IPR029058+89-593_98-573+
|
— |
PF00135+97-416+Carboxylesterase_family
|
— |
PTHR45580+93-610+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-754
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
86337.740
|
6.685
|
2.000
|
25.862
|
14.191
|
48.143
|
51.857
|
13.660
|
12.202
|
48.408
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1138.294
|
3207.256
|
735.291
|
673.665
|
1035.879
|
1430.370
|
1928.405
|
351.690
|
528.901
|
1072.402
|
839.473
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.356
|
-2.388
|
— |
0.589
|
0.480
|
0.442
|
-2.134
|
2.599
|
— | — | — | — | — |