Hg_chrom3_TN10mRNA_5482
Organism: Heterodera glycines Gene Locus: chr3:6342402-6346687 Feature type: polypeptideProtein Sequence
Length: 765
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.532 | 1.034 | 1.046 | 0.316 | 1.765 | 1.274 | 0.56 | 2.026 | 1.133 | 0.671 | 1.386 | 1.769 | 1.162 | 0.88 | 1.601 | 0.747 | 0.879 | 0.812 | 1.207 | 1.077 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5203
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKQYEFIEHSLKKANK,KRVQQKRNPYTKKWRKV,KRNPYTKKWRKVLGKRRNG,KKQRKEAEESDVRKEKKRE,QRKEAEESDVRKEKKREKETKGKRIERQEKPIGKEMIRQIERELKPKGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.774
|
0.074
|
0.006
|
0.346
|
0.087
|
0.056
|
0.086
|
0.024
|
0.183
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003585
|
1.000
|
2.000
|
Hsc_gene_1078.t1;Hsc_gene_1078.t2
|
Hsc_gene_1078.t1;Hsc_gene_1078.t2
|
— |
Q6ZNF0.2 Acid phosphatase type 7 [Homo sapiens]
|
KAF7632360.1 Purple acid phosphatase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.963|GO:0003674_0.873|GO:0003824_0.706|GO:0016787_0.688|GO:0016788_0.660|GO:0005575_0.655|GO:0110165_0.655|GO:0003993_0.650|GO:0016791_0.650|GO:0042578_0.650|GO:0005622_0.625|GO:0043226_0.583|GO:0009987_0.582|GO:0016020_0.579|GO:0043229_0.562|GO:0065007_0.551|GO:0050789_0.533|GO:0005488_0.524|GO:0043227_0.505
|
IPR004843+59-362+|IPR029052+57-384_112-480+|IPR041792+136-487+
|
— |
PF00149+59-362+Calcineurin-like_phosphoesterase
|
— |
PTHR45867+132-488+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;508-765
|
1.000
|
8-507
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
90482.970
|
8.481
|
20.500
|
37.386
|
13.464
|
57.386
|
42.614
|
21.046
|
16.340
|
40.915
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
midnightblue
|
728.103
|
151.391
|
253.080
|
436.527
|
156.599
|
189.504
|
214.056
|
200.916
|
1846.814
|
1199.562
|
1476.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
1.391
|
0.896
|
-1.511
|
0.290
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.