Hg_chrom3_TN10mRNA_5485
Organism: Heterodera glycines Gene Locus: chr3:6351981-6354144 Feature type: polypeptideProtein Sequence
Length: 392
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.86 | 0.653 | 0.464 | 2.199 | 0.978 | 1.112 | 0.668 | 2.041 | 0.794 | 1.379 | 1.005 | 1.2 | 0.992 | 0.932 | 1.666 | 0.875 | 0.878 | 0.85 | 2.159 | 0.6 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5206
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.678
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
6-41
|
0.968
|
33-77
|
0.792
|
— | — |
0.103
|
— | — |
0.039
|
0.103
|
0.008
|
0.186
|
0.254
|
0.211
|
0.319
|
0.005
|
0.199
|
0.779
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007673
|
1.000
|
1.000
|
Hsc_gene_1075.t1
|
Hsc_gene_1075.t1
|
— |
Q27886.1 Abnormal cell lineage protein 44 [Caenorhabditis elegans]
|
KAI3415641.1 Abnormal cell lineage protein 44 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005102|GO:0005576|GO:0007275|GO:0016055
|
GO:0008150_0.956|GO:0009987_0.855|GO:0032502_0.806|GO:0048856_0.806|GO:0065007_0.788|GO:0050789_0.775|GO:0032501_0.765|GO:0050794_0.757|GO:0048513_0.732|GO:0050896_0.726|GO:0051716_0.680|GO:0007275_0.677|GO:0005575_0.674|GO:0007154_0.674|GO:0110165_0.674|GO:0023052_0.672|GO:0048869_0.672|GO:0030154_0.667|GO:0048731_0.667|GO:0007165_0.651|GO:0007166_0.594|GO:0003674_0.565|GO:0016055_0.527|GO:0009653_0.523|GO:0048518_0.513
|
IPR005817+77-391_89-391_90-391_141-155_160-173_190-202_254-268_306-317+|IPR018161+253-262+|IPR043158+330-391+
|
SM00097+77-391+
|
PF00110+89-391+wnt_family
|
— |
PTHR12027+90-391+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-392
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
44805.200
|
9.351
|
33.000
|
27.296
|
12.500
|
45.918
|
54.082
|
18.878
|
8.418
|
46.684
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
67.926
|
46.152
|
88.738
|
57.173
|
60.285
|
181.595
|
108.315
|
138.423
|
0.000
|
41.920
|
23.954
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
— |
-0.526
|
— |
1.607
|
-0.737
|
-0.496
|
— | — |
6.694
|
— | — | — |
No JSON data available for plots.