SCN Proteipedia

Hg_chrom3_TN10mRNA_5487

Organism: Heterodera glycines Gene Locus: chr3:6366377-6368410 Feature type: polypeptide

Protein Sequence

Length: 335

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.937	0.694	0.814	0.515	0.647	0.918	0.924	2.687	2.056	1.493	0.226	1.932	0.912	0.402	1.218	0.938	1.077	1.357	1.378	0.615	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5208	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole\|golgi_apparatus	—	—	50-89	0.968	—	—	—	—	0.000	—	—	0.133	0.131	0.002	0.160	0.314	0.604	0.787	0.042	0.569	0.008

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003571	2.000	1.000	Hsc_gene_1072.t1	Hsc_gene_1072.t1	—	Q2HJ10.1 Proton-coupled zinc antiporter SLC30A2 [Mus musculus]	KAI6240792.1 Zinc transporter 2 [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006812\|GO:0008324\|GO:0016020\|GO:0055085	GO:0008150_0.922\|GO:0005575_0.721\|GO:0110165_0.721\|GO:0009987_0.717\|GO:0006810_0.701\|GO:0051179_0.701\|GO:0051234_0.701\|GO:0016020_0.662\|GO:0003674_0.645\|GO:0006811_0.618\|GO:0006812_0.600\|GO:0030001_0.592\|GO:0055085_0.592\|GO:0071944_0.583\|GO:0005886_0.575\|GO:0000041_0.571\|GO:0005622_0.565\|GO:0005737_0.565\|GO:0006829_0.560\|GO:0034220_0.552\|GO:0098660_0.546\|GO:0098655_0.532\|GO:0098662_0.532\|GO:0043226_0.522	IPR002524+2-241_2-320+\|IPR027469+1-240_2-242+\|IPR036837+245-319+\|IPR050681+2-334+	—	PF01545+2-241+Cation_efflux_family	G3DSA:1.20.1510.10:FF:000027+1-240+Zinc_transporter_ttm-1	PTHR11562+2-334+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-335	9jj2_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.529	37063.020	7.120	6.000	21.194	12.537	40.896	59.104	12.836	8.358	48.955

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	508.103	1699.122	439.442	226.062	182.687	259.808	466.966	667.267	290.642	526.962	425.682

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.178	-3.047	-0.852	-0.339	0.522	0.856	1.258	-0.374	—	—	—	—	—

No JSON data available for plots.

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