Hg_chrom3_TN10mRNA_5492
Organism: Heterodera glycines Gene Locus: chr3:6390543-6395004 Feature type: polypeptideProtein Sequence
Length: 720
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 1.583 | 0.631 | 0.335 | 0.903 | 1.068 | 0.728 | 1.597 | 1.173 | 1.107 | 0.842 | 2.042 | 1.312 | 1.095 | 1.162 | 1.29 | 1.093 | 0.821 | 0.748 | 0.654 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5213
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.346
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRPPRVRPKTLLAMGRRRT,KRPMSSMSPLIVYHKENKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.156
|
0.028
|
0.002
|
0.231
|
0.331
|
0.466
|
0.488
|
0.020
|
0.692
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007676
|
1.000
|
1.000
|
Hsc_gene_1064.t1
|
Hsc_gene_1064.t1;Hsc_gene_1065.t1
|
— |
P07314.4 Glutathione hydrolase 1 proenzyme [Rattus norvegicus]
|
KAI1705962.1 gamma-glutamyltranspeptidase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006751|GO:0036374
|
GO:0005575_0.879|GO:0110165_0.879|GO:0016020_0.742|GO:0008150_0.738|GO:0009987_0.616|GO:0003674_0.609|GO:0043226_0.529
|
IPR000101+252-711+|IPR029055+189-711+|IPR043137+522-720+|IPR043138+410-515+
|
— |
PF01019+238-712+Gamma-glutamyltranspeptidase
|
G3DSA:3.60.20.40:FF:000009+521-720+Predicted_protein
|
PTHR11686+252-711+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-110
|
1.000
|
111-720
|
4gdx_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.927
|
80372.510
|
9.817
|
28.500
|
23.333
|
11.111
|
50.000
|
50.000
|
14.444
|
8.889
|
51.111
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
296.272
|
627.025
|
234.727
|
292.092
|
623.016
|
448.358
|
271.878
|
401.224
|
23.220
|
191.906
|
119.612
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.648
|
-1.239
|
0.425
|
1.062
|
-0.460
|
-0.714
|
— |
-0.418
|
— |
3.857
|
— | — | — |
No JSON data available for plots.