SCN Proteipedia

Hg_chrom3_TN10mRNA_5493

Organism: Heterodera glycines Gene Locus: chr3:6395055-6396999 Feature type: polypeptide

Protein Sequence

Length: 278

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.586	1.589	0.719	0.992	1.139	1.568	0.642	0.719	1.519	1.215	0.491	1.693	1.499	0.623	1.395	1.439	0.531	0.763	1.107	1.27	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5214	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Egg_ppJ2_pJ2_J3_J4	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.001	—	—	0.737	0.072	0.003	0.599	0.087	0.183	0.166	0.010	0.163	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007677	1.000	1.000	Hsc_gene_1063.t1	Hsc_gene_1063.t1;Hsc_gene_1063.t2	—	P84022.1 Mothers against decapentaplegic homolog 3 [Homo sapiens]	KAI3415656.1 Mothers against decapentaplegic 3 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006355	GO:0008150_0.880\|GO:0009987_0.794\|GO:0005575_0.769\|GO:0110165_0.769\|GO:0065007_0.758\|GO:0050789_0.748\|GO:0050794_0.730\|GO:0005622_0.718\|GO:0032501_0.684\|GO:0050896_0.664\|GO:0032502_0.661\|GO:0016020_0.645\|GO:0048856_0.644\|GO:0008152_0.629\|GO:0043226_0.621\|GO:0044238_0.619\|GO:0043229_0.611\|GO:0044237_0.608\|GO:0043170_0.606\|GO:0048518_0.605\|GO:0043227_0.602\|GO:0003674_0.600\|GO:0009058_0.598\|GO:0051716_0.592\|GO:0048522_0.590\|GO:0007275_0.589\|GO:0043231_0.583\|GO:0009059_0.579\|GO:0044249_0.579\|GO:0019222_0.572\|GO:0006139_0.568\|GO:0010467_0.568\|GO:0031323_0.566\|GO:0060255_0.563\|GO:0080090_0.560\|GO:0007154_0.557\|GO:0023052_0.557\|GO:0009889_0.552\|GO:0031326_0.552\|GO:0090304_0.551\|GO:0034654_0.550\|GO:0010468_0.546\|GO:0010556_0.546\|GO:0007165_0.545\|GO:0016070_0.543\|GO:0141187_0.541\|GO:0032774_0.538\|GO:0019219_0.531\|GO:0005488_0.529\|GO:0006351_0.528\|GO:0051252_0.528\|GO:0006355_0.526\|GO:2001141_0.526\|GO:0048519_0.516\|GO:0005737_0.513\|GO:0007166_0.511\|GO:0048523_0.505	IPR001132+62-252_63-251_64-278+\|IPR008984+49-262+\|IPR013790+36-267+\|IPR017855+58-272+	SM00524+62-252+	PF03166+63-251+MH2_domain	—	PTHR13703+36-267+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-278	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.755	31978.270	6.476	0.000	22.302	12.590	48.561	51.439	11.511	10.791	45.683

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1912.878	3655.342	1953.185	2834.626	3002.371	2202.385	1277.719	1628.980	202.349	2009.100	1234.778

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.135	-0.504	0.647	—	-0.431	-0.778	-0.540	-0.209	-3.470	4.000	—	—	—

No JSON data available for plots.

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