Hg_chrom3_TN10mRNA_5494
Organism: Heterodera glycines Gene Locus: chr3:6398976-6402158 Feature type: polypeptideProtein Sequence
Length: 536
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.02 | 1.215 | 0.984 | 0.45 | 1.275 | 2.201 | 0.755 | 1.119 | 0.788 | 0.983 | 0.707 | 2.524 | 1.036 | 0.933 | 1.066 | 1.253 | 0.948 | 0.678 | 0.431 | 0.384 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5215
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
RELKRIR,KKVILNDEERKLCKK,RRKIRNKMSAQTSRRKKQD,LKRIRRKIRNKMSAQTSRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.421
|
0.212
|
0.024
|
0.149
|
0.760
|
0.088
|
0.492
|
0.048
|
0.045
|
0.006
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007678
|
1.000
|
1.000
|
Hsc_gene_1062.t1
|
Hsc_gene_1062.t1
|
— |
O44743.2 CREB-H transcription factor homolog let-607 [Caenorhabditis elegans]
|
KAI1721785.1 bZIP transcription factor domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0006355
|
GO:0008150_0.915|GO:0009987_0.873|GO:0065007_0.873|GO:0005575_0.868|GO:0050789_0.866|GO:0110165_0.866|GO:0050794_0.848|GO:0005622_0.795|GO:0003674_0.759|GO:0005488_0.759|GO:0008152_0.737|GO:0019222_0.737|GO:0031323_0.734|GO:0044237_0.734|GO:0043170_0.726|GO:0060255_0.720|GO:0009058_0.718|GO:0009059_0.718|GO:0010467_0.718|GO:0044249_0.718|GO:0043226_0.711|GO:0009889_0.709|GO:0031326_0.709|GO:0010556_0.702|GO:0010468_0.699|GO:0043229_0.686|GO:0016020_0.685|GO:0044238_0.681|GO:0080090_0.681|GO:0048518_0.663|GO:0006139_0.660|GO:0016070_0.660|GO:0032774_0.660|GO:0034654_0.660|GO:0090304_0.660|GO:0141187_0.660|GO:0019219_0.646|GO:0051252_0.641|GO:0006351_0.640|GO:0097159_0.639|GO:0006355_0.636|GO:2001141_0.636|GO:0003676_0.632|GO:0043227_0.594|GO:0003677_0.593|GO:0009893_0.592|GO:0043565_0.590|GO:0048522_0.588|GO:0006366_0.577|GO:0009891_0.577|GO:0006357_0.572|GO:0043231_0.569|GO:0005737_0.554|GO:0050896_0.554|GO:0071944_0.552|GO:0031325_0.551|GO:0010604_0.548|GO:0003690_0.543|GO:1990837_0.543|GO:0031328_0.538|GO:0005886_0.535|GO:0010557_0.532|GO:0045935_0.518|GO:0051254_0.516|GO:1902680_0.505|GO:0045893_0.504|GO:0051716_0.503
|
IPR004827+297-358_297-361_299-362_304-319+|IPR046347+300-359+|IPR051381+76-467+
|
SM00338+297-361+
|
PF00170+297-358+bZIP_transcription_factor
|
— |
PTHR45996+76-467+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-254;403-536
|
1.000
|
255-402
|
6iak_G
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
59320.200
|
5.101
|
-11.000
|
25.187
|
7.836
|
53.545
|
46.455
|
12.127
|
13.060
|
50.933
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3972.459
|
3284.909
|
4461.462
|
1484.682
|
1457.207
|
2241.534
|
1574.570
|
1985.779
|
14197.606
|
547.500
|
6397.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.212
|
-1.283
|
-1.479
|
— |
0.637
|
-0.500
|
— |
-0.192
|
4.567
|
-3.079
|
— | — | — |
No JSON data available for plots.