SCN Proteipedia

Hg_chrom3_TN10mRNA_5495

Organism: Heterodera glycines Gene Locus: chr3:6415412-6418410 Feature type: polypeptide

Protein Sequence

Length: 628

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.944	0.63	0.926	1.153	1.168	1.388	0.739	1.354	0.46	1.442	0.676	1.124	1.062	1.133	1.917	1.183	0.705	0.869	1.225	0.375	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5216	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.897

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRRS,RRRR	45-65	0.976	40-68	0.938	—	—	0.000	—	—	0.300	0.190	0.012	0.683	0.190	0.257	0.299	0.052	0.456	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001956	1.000	3.000	Hsc_gene_1061.t1;Hsc_gene_1061.t2;Hsc_gene_1061.t3	Hsc_gene_1061.t1;Hsc_gene_1061.t2;Hsc_gene_1061.t3	—	O43307.3 Rho guanine nucleotide exchange factor 9 [Homo sapiens]	KAI1711421.1 rhoGEF domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005085\|GO:0005515\|GO:0035556	GO:0005575_0.894\|GO:0008150_0.882\|GO:0110165_0.880\|GO:0009987_0.838\|GO:0005622_0.815\|GO:0065007_0.706\|GO:0050789_0.691\|GO:0050794_0.676\|GO:0050896_0.590\|GO:0005737_0.568\|GO:0051716_0.567\|GO:0007154_0.550\|GO:0023052_0.547\|GO:0016020_0.540\|GO:0043226_0.510\|GO:0007165_0.508	IPR000219+290-474_291-472_294-472_294-473+\|IPR001331+422-447+\|IPR001452+200-259_203-258_217-256+\|IPR001849+505-613_506-615+\|IPR011993+497-622+\|IPR035899+274-496_277-494+\|IPR036028+203-260+\|IPR053086+25-610+	SM00233+506-615+\|SM00325+294-473+\|SM00326+203-258+	PF00621+294-472+RhoGEF_domain\|PF07653+217-256+Variant_SH3_domain\|PF22697+504-610+SOS1/NGEF-like_PH_domain	—	PTHR45834+25-610+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-173;619-628	1.000	174-618	2ysq_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.817	70576.270	8.457	19.500	28.662	9.395	49.363	50.637	16.561	12.102	49.682

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	lightcyan	1088.683	2084.680	1289.618	1046.005	869.376	1343.636	1641.684	965.586	830.388	674.977	741.582

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.922	-1.132	-0.193	-0.299	0.643	0.299	-0.587	0.910	—	—	—	—	—

No JSON data available for plots.

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