Hg_chrom3_TN10mRNA_5496
Organism: Heterodera glycines Gene Locus: chr3:6418946-6421196 Feature type: polypeptideProtein Sequence
Length: 403
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.096 | 1.27 | 0.406 | 0.941 | 0.207 | 0.445 | 1.211 | 1.489 | 1.379 | 1.442 | 0.376 | 1.022 | 2.688 | 0.954 | 0.861 | 1.063 | 0.651 | 1.09 | 2.672 | 0.584 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5217
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— | — |
16-47
|
0.994
|
1-29
|
0.961
|
— | — |
0.001
|
— | — |
0.112
|
0.246
|
0.041
|
0.158
|
0.369
|
0.360
|
0.249
|
0.028
|
0.496
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003587
|
1.000
|
2.000
|
Hsc_gene_1060.t1;Hsc_gene_1060.t2
|
Hsc_gene_1060.t1;Hsc_gene_1060.t2
|
— |
Q9LZD0.1 Purine-uracil permease NCS1 [Arabidopsis thaliana]
|
KAI1710738.1 permease for cytosine/purine, uracil, thiamine, allantoin domain-containing protein [Ditylenchus destructor]
|
WP_181659210
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.948|GO:0005575_0.880|GO:0110165_0.871|GO:0016020_0.824|GO:0006810_0.801|GO:0051179_0.801|GO:0051234_0.801|GO:0071705_0.725|GO:0003674_0.718|GO:0009987_0.706|GO:0071944_0.670|GO:0055085_0.652|GO:0005886_0.639|GO:0005215_0.623|GO:0022857_0.623|GO:0005622_0.607|GO:0005737_0.607|GO:0043226_0.550|GO:0043227_0.549|GO:0043229_0.539|GO:0043231_0.538
|
IPR001248+48-369+|IPR045225+37-383+
|
— |
PF02133+48-369+Permease_for_cytosine/purines,_uracil,_thiamine,_allantoin
|
— |
PTHR30618+37-383+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
403-403
|
1.000
|
1-402
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.942
|
44176.530
|
9.487
|
19.000
|
13.151
|
18.114
|
31.762
|
68.238
|
9.677
|
3.474
|
53.598
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1005.099
|
83.614
|
762.082
|
268.460
|
93.538
|
253.978
|
294.831
|
1535.603
|
114.260
|
3077.072
|
1807.295
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.960
|
1.545
|
-1.398
|
-1.552
|
1.453
|
— |
2.492
|
-2.239
|
-4.884
|
— |
-4.656
|
— | — |
No JSON data available for plots.