Hg_chrom3_TN10mRNA_5497
Organism: Heterodera glycines Gene Locus: chr3:6421391-6423001 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.123 | 1.321 | 0.93 | 0.98 | 1.373 | 0.583 | 0.879 | 0.71 | 1.705 | 1.536 | 0.947 | 1.003 | 2.131 | 0.765 | 0.638 | 0.649 | 0.699 | 0.818 | 0.437 | 0.251 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5218
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.350
|
0.215
|
0.056
|
0.806
|
0.243
|
0.143
|
0.274
|
0.015
|
0.106
|
0.096
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007679
|
1.000
|
1.000
|
Hsc_gene_1059.t1
|
Hsc_gene_1059.t1
|
— |
Q9LZG0.1 Adenosine kinase 2 [Arabidopsis thaliana]
|
KAI1720531.1 pfkB family carbohydrate kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004001|GO:0006166|GO:0016301
|
GO:0008150_0.844|GO:0005575_0.796|GO:0110165_0.796|GO:0009987_0.769|GO:0005622_0.716|GO:0005737_0.716|GO:0003674_0.715|GO:0016020_0.686|GO:0008152_0.685|GO:0044237_0.658|GO:0044238_0.656|GO:0044281_0.619|GO:0009058_0.601|GO:0006139_0.587|GO:0055086_0.577|GO:0034654_0.557|GO:0003824_0.549|GO:0006793_0.546|GO:0006796_0.546|GO:0043226_0.512|GO:1901135_0.504
|
IPR001805+3-343_67-76_158-184_269-288+|IPR002173+296-309+|IPR011611+33-343+|IPR029056+5-333_5-341+
|
— |
PF00294+33-343+pfkB_family_carbohydrate_kinase
|
— |
PTHR45769+3-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-352
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.607
|
38653.630
|
4.656
|
-11.500
|
24.148
|
10.511
|
40.909
|
59.091
|
10.795
|
13.352
|
48.864
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
185.119
|
12.985
|
338.938
|
141.107
|
94.084
|
141.068
|
213.956
|
300.916
|
299.424
|
119.183
|
196.429
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.476
|
3.303
|
-1.156
|
-0.617
|
0.598
|
0.609
|
0.990
|
— | — | — | — | — | — |
No JSON data available for plots.