Hg_chrom3_TN10mRNA_5498
Organism: Heterodera glycines Gene Locus: chr3:6423100-6424720 Feature type: polypeptideProtein Sequence
Length: 317
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 1.027 | 0.459 | 0.653 | 0.631 | 0.485 | 0.338 | 0.946 | 2.173 | 1.663 | 0.335 | 1.485 | 2.103 | 0.667 | 1.03 | 0.946 | 1.034 | 1.243 | 1.456 | 2.041 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5219
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
36-56
|
0.887
|
— | — | — | — |
0.000
|
— | — |
0.089
|
0.050
|
0.025
|
0.071
|
0.429
|
0.280
|
0.242
|
0.049
|
0.830
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007680
|
1.000
|
1.000
|
Hsc_gene_1058.t1
|
Hsc_gene_1058.t1
|
— | — |
KAI3415660.1 hypothetical protein GPALN_005253 [Globodera pallida]
|
No
|
-0.310
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0005575_0.901|GO:0110165_0.895|GO:0016020_0.881|GO:0071944_0.872|GO:0005886_0.871|GO:0050896_0.787|GO:0043226_0.728|GO:0042221_0.722|GO:0043227_0.718|GO:0006950_0.711|GO:0009605_0.697|GO:0044419_0.691|GO:0009607_0.688|GO:0043207_0.688|GO:0051707_0.687|GO:0051606_0.685|GO:0006952_0.684|GO:0098542_0.678|GO:0009617_0.677|GO:0009593_0.676|GO:0042742_0.674|GO:0050830_0.670|GO:0098590_0.598|GO:0032991_0.591|GO:0042995_0.574|GO:0120025_0.570|GO:0005929_0.548|GO:0030990_0.548
|
IPR019408+37-287+|IPR053286+17-281+
|
— |
PF10292+37-287+Serpentine_type_7TM_GPCR_receptor_class_ab_chemoreceptor
|
— |
PTHR46561+17-281+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
36689.250
|
8.198
|
6.000
|
15.457
|
18.297
|
34.700
|
65.300
|
9.148
|
6.309
|
44.164
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
86.542
|
32.701
|
141.367
|
56.536
|
24.439
|
41.067
|
57.320
|
89.898
|
44.045
|
179.338
|
121.355
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.882
|
0.653
|
-1.212
|
-1.240
|
0.762
|
— |
1.027
|
-0.510
|
— | — | — | — | — |
No JSON data available for plots.