Hg_chrom3_TN10mRNA_5499
Organism: Heterodera glycines Gene Locus: chr3:6425129-6436074 Feature type: polypeptideProtein Sequence
Length: 1,990
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.672 | 1.227 | 1.133 | 2.928 | 1.08 | 1.25 | 0.879 | 1.005 | 0.838 | 0.883 | 0.655 | 0.591 | 1.061 | 1.295 | 1.067 | 0.976 | 1.071 | 0.769 | 0.309 | 0.946 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5220
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.829
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-25
|
0.942
|
1.000
|
1.000
|
1.000
|
0.156
|
0.016
|
0.007
|
0.333
|
0.182
|
0.293
|
0.185
|
0.029
|
0.862
|
0.168
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007681
|
1.000
|
1.000
|
Hsc_gene_1057.t1
|
Hsc_gene_1057.t1
|
— |
Q21281.4 Transmembrane matrix receptor MUP-4 [Caenorhabditis elegans]
|
KAH7731649.1 transmembrane cell adhesion receptor mua-3 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0005575_0.909|GO:0110165_0.906|GO:0008150_0.633|GO:0071944_0.620|GO:0009987_0.536
|
IPR000082+1343-1469_1343-1470_1518-1642_1518-1643+|IPR000152+96-107_148-159_199-210_300-311_346-357_397-408_858-869_908-919_958-969_1163-1174_1211-1222_1259-1270_1710-1721_1817-1828+|IPR000742+36-77_78-117_81-126_128-168_131-179_181-220_184-230_241-283_244-283_284-321_287-328_330-367_333-377_379-418_382-428_633-675_678-719_840-878_843-889_891-931_894-939_941-987_944-987_992-1031_995-1039_1044-1093_1098-1143_1145-1184_1148-1191_1193-1232_1196-1240_1241-1286_1243-1286_1481-1517_1644-1681_1647-1688_1692-1731_1695-1740_1799-1838_1802-1845_1809-1835+|IPR001881+38-77_79-126_128-179_181-230_241-283_288-328_332-377_379-428_842-889_892-939_942-987_992-1039_1050-1093_1146-1191_1194-1240_1241-1286_1648-1688_1692-1740_1799-1845+|IPR002035+437-619_439-607_439-618+|IPR009030+37-164_291-418_815-952+|IPR013032+90-111_340-361_852-873_902-923_1157-1178_1205-1224+|IPR018097+1799-1826+|IPR024730+140-164+|IPR024731+945-974+|IPR036465+418-618_437-628+|IPR049883+182-215_289-316_381-413_1241-1278+
|
SM00179+38-77_79-126_128-179_181-230_241-283_288-328_332-377_379-428_842-889_892-939_942-987_992-1039_1050-1093_1146-1191_1194-1240_1241-1286_1648-1688_1692-1740_1799-1845+|SM00181+36-77_81-126_131-179_184-230_244-283_287-328_333-377_382-428_633-675_678-719_843-889_894-939_944-987_995-1039_1044-1093_1098-1143_1148-1191_1196-1240_1243-1286_1481-1517_1647-1688_1695-1740_1802-1845+|SM00200+1343-1469_1518-1642+|SM00327+437-619+
|
PF00008+1809-1835+EGF-like_domain|PF00092+439-607+von_Willebrand_factor_type_A_domain|PF07645+182-215_289-316_381-413_1241-1278+Calcium-binding_EGF_domain|PF12661+90-111_340-361_852-873_902-923_1157-1178_1205-1224+Human_growth_factor-like_EGF|PF12946+140-164+MSP1_EGF_domain_1|PF12947+945-974+EGF_domain
|
G3DSA:3.40.50.410:FF:000047+436-629+von_Willebrand_factor_A_domain_containing_2
|
PTHR24039+1650-1838+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1934-1990
|
1.000
|
1-1933
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.625
|
219049.990
|
4.987
|
-43.000
|
24.271
|
9.447
|
47.789
|
52.211
|
11.558
|
12.714
|
58.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
2066.226
|
622.331
|
2653.061
|
770.876
|
604.754
|
8126.118
|
1040.528
|
6645.124
|
95.635
|
1294.465
|
780.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.865
|
0.172
|
-1.675
|
-0.383
|
3.763
|
-2.955
|
-0.400
|
-2.531
|
-3.902
|
— | — | — | — |