Hg_chrom3_TN10mRNA_5500
Organism: Heterodera glycines Gene Locus: chr3:6438628-6441120 Feature type: polypeptideProtein Sequence
Length: 504
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.846 | 0.289 | 0.547 | 0.694 | 0.712 | 0.779 | 0.992 | 1.764 | 1.609 | 0.541 | 1.751 | 2.094 | 0.649 | 0.769 | 1.105 | 0.716 | 1.383 | 0.916 | 0.817 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5221
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.609
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.130
|
0.020
|
0.140
|
0.318
|
0.636
|
0.309
|
0.006
|
0.661
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007682
|
1.000
|
1.000
|
Hsc_gene_1056.t1
|
Hsc_gene_1056.t1
|
— |
P34479.2 Probable amino acid transporter skat-1 [Caenorhabditis elegans]
|
KAI1705117.1 transmembrane amino acid transporter protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.877|GO:0005575_0.835|GO:0110165_0.825|GO:0009987_0.798|GO:0016020_0.779|GO:0006810_0.773|GO:0051179_0.773|GO:0051234_0.773|GO:0003674_0.720|GO:0055085_0.691|GO:0071944_0.638|GO:0005886_0.634|GO:0005215_0.632|GO:0022857_0.632|GO:0043226_0.582|GO:0005622_0.565|GO:0005737_0.565|GO:0006865_0.561|GO:0043227_0.557|GO:0003333_0.546|GO:0015171_0.521|GO:0005773_0.518|GO:0043229_0.518|GO:0043231_0.518
|
IPR013057+70-487+
|
— |
PF01490+70-487+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+67-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-30
|
1.000
|
31-504
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
56030.630
|
8.947
|
13.000
|
15.079
|
13.492
|
37.897
|
62.103
|
9.325
|
5.754
|
49.405
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
960.317
|
38.919
|
639.827
|
1094.180
|
411.113
|
916.209
|
357.554
|
3940.051
|
433.634
|
1101.965
|
815.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.810
|
4.675
|
0.882
|
-1.444
|
1.169
|
-1.348
|
2.004
|
-3.322
|
— | — | — | — | — |
No JSON data available for plots.