SCN Proteipedia

Hg_chrom3_TN10mRNA_5502

Organism: Heterodera glycines Gene Locus: chr3:6450123-6453763 Feature type: polypeptide

Protein Sequence

Length: 810

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.718	1.12	0.943	0.937	1.111	2.121	0.897	1.914	0.768	0.817	0.842	1.089	0.96	1.33	1.537	1.129	0.891	0.636	0.76	0.436	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5223	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	12-Not_Clustered	0.949

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	PPKKEKKKKTK	—	—	—	—	—	—	0.000	—	—	0.472	0.090	0.005	0.737	0.264	0.097	0.221	0.013	0.077	0.019

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001957	1.000	3.000	Hsc_gene_15583.t1;Hsc_gene_15583.t2;Hsc_gene_5683.t1	Hsc_gene_15583.t1;Hsc_gene_15583.t2	—	Q86UK7.1 E3 ubiquitin-protein ligase ZNF598 [Homo sapiens]	KAF7627271.1 RING-type domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0061630\|GO:0072344	GO:0005575_0.929\|GO:0110165_0.925\|GO:0005622_0.869\|GO:0005737_0.705\|GO:0008150_0.692\|GO:0065007_0.661\|GO:0050789_0.655\|GO:0009987_0.654\|GO:0050794_0.645\|GO:0003674_0.620\|GO:0043226_0.605\|GO:0005488_0.604\|GO:0005829_0.599\|GO:0043229_0.587\|GO:0008152_0.563\|GO:0043170_0.563\|GO:0019222_0.557\|GO:0031323_0.550\|GO:0044237_0.550\|GO:0060255_0.548\|GO:0005515_0.543\|GO:0048519_0.538\|GO:0009058_0.535\|GO:0009059_0.535\|GO:0044238_0.535\|GO:0044249_0.535\|GO:0010467_0.533\|GO:0080090_0.531\|GO:0009889_0.522\|GO:0010556_0.522\|GO:0031326_0.522\|GO:0071840_0.522\|GO:0010468_0.519\|GO:0048523_0.519\|GO:0016043_0.518	IPR001841+174-214+\|IPR013083+153-223+\|IPR013087+267-295_298-331_341-364_343-364_365-395_396-423+\|IPR017907+189-198+\|IPR044288+173-678+	SM00355+267-295_298-331_341-364_365-395_396-423+	—	—	PTHR22938+173-678+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-160;419-810	1.000	161-418	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.884	90789.180	8.355	25.500	28.765	9.753	55.185	44.815	16.914	11.852	50.864

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	green	5417.795	3107.735	3787.249	3257.827	3144.983	2617.999	3437.681	2468.974	8869.640	8867.204	8868.248

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-0.069	-0.108	-0.083	-0.250	0.404	-0.189	0.620	—	-1.274	—	—	—

No JSON data available for plots.

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