SCN Proteipedia

Hg_chrom3_TN10mRNA_5503

Organism: Heterodera glycines Gene Locus: chr3:6453805-6457782 Feature type: polypeptide

Protein Sequence

Length: 916

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.977	0.914	0.854	0.678	1.474	0.672	0.923	1.201	1.48	1.018	1.059	1.413	1.365	0.819	1.181	0.749	0.913	1.042	1.092	0.514	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5224	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	0.993

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KKPILKTKSWRRKNKE,KHKKPILKTKSWRRKNK	—	—	—	—	—	—	0.000	—	—	0.351	0.344	0.093	0.608	0.203	0.213	0.138	0.238	0.146	0.169

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007683	1.000	1.000	Hsc_gene_15582.t1	Hsc_gene_15582.t1;Hsc_gene_19038.t3	—	Q6GNL7.1 Cytosolic 10-formyltetrahydrofolate dehydrogenase [Xenopus laevis]	KAH7730630.1 10-formyltetrahydrofolate dehydrogenase ALDH1L2 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003824\|GO:0005737\|GO:0006730\|GO:0009058\|GO:0009258\|GO:0016155\|GO:0016491\|GO:0016620	GO:0008150_0.845\|GO:0003674_0.810\|GO:0005575_0.769\|GO:0009987_0.751\|GO:0110165_0.750\|GO:0003824_0.700\|GO:0008152_0.691\|GO:0005622_0.669\|GO:0044237_0.635\|GO:0005737_0.595\|GO:0016491_0.585\|GO:0044238_0.554\|GO:0016020_0.512\|GO:0044281_0.501	IPR001555+137-160+\|IPR002376+1-185+\|IPR005793+213-317+\|IPR009081+332-410_341-402+\|IPR011034+214-317+\|IPR011407+1-916+\|IPR015590+446-912+\|IPR016160+714-725+\|IPR016161+432-915+\|IPR016162+439-911+\|IPR016163+690-881+\|IPR029510+686-693+\|IPR036477+1-207+\|IPR036736+332-413_336-401+\|IPR037022+214-319+	—	PF00171+446-912+Aldehyde_dehydrogenase_family\|PF00550+341-402+Phosphopantetheine_attachment_site\|PF00551+1-185+Formyl_transferase\|PF02911+213-317+Formyl_transferase,_C-terminal_domain	G3DSA:3.40.309.10:FF:000012+690-881+Betaine_aldehyde_dehydrogenase\|G3DSA:3.40.605.10:FF:000001+448-712+Aldehyde_dehydrogenase_1\|G3DSA:3.40.605.10:FF:000026+884-910+Aldehyde_dehydrogenase,_putative	PTHR11699+159-914+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-916	4go2_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.609	102107.000	6.802	4.000	28.712	10.480	46.070	53.930	15.175	13.537	48.690

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	purple	2431.744	957.721	3604.859	3797.596	4376.058	4943.517	2500.617	4299.093	682.078	947.522	833.760

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.684	1.850	0.183	0.173	0.191	-0.973	-0.309	-0.638	—	2.586	—	—	—

No JSON data available for plots.

Back to Browser