Hg_chrom3_TN10mRNA_5504
Organism: Heterodera glycines Gene Locus: chr3:6458433-6459737 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.546 | 1.569 | 1.226 | 1.416 | 1.564 | 1.203 | 0.698 | 1.026 | 0.717 | 1.03 | 0.755 | 0.863 | 1.385 | 1.579 | 1.377 | 1.341 | 0.625 | 0.533 | 0.902 | 0.173 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5225
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKLSGQRPNWDELPIRPRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.852
|
0.099
|
0.030
|
0.424
|
0.052
|
0.029
|
0.047
|
0.039
|
0.048
|
0.125
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007684
|
1.000
|
1.000
|
Hsc_gene_15581.t1
|
Hsc_gene_15581.t1
|
— |
A0A486WWJ9.1 Zinc finger protein somi-1 [Caenorhabditis elegans]
|
KAI1727142.1 c2H2-type zinc-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.916|GO:0110165_0.916|GO:0005622_0.875|GO:0016020_0.822|GO:0043226_0.819|GO:0043229_0.810|GO:0005634_0.774|GO:0043227_0.774|GO:0043231_0.774
|
IPR036236+254-279+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-67;103-164;300-341
|
2.000
|
68-102;165-299
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.681
|
38350.520
|
4.788
|
-11.500
|
29.912
|
8.798
|
54.545
|
45.455
|
13.783
|
16.129
|
53.079
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
tan
|
212.079
|
42.528
|
53.953
|
136.301
|
248.180
|
192.073
|
221.639
|
118.448
|
606.457
|
93.083
|
313.101
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.542
|
1.445
|
0.831
|
-0.354
|
— |
-0.808
|
1.048
|
— | — | — | — | — |
No JSON data available for plots.