Hg_chrom3_TN10mRNA_5507
Organism: Heterodera glycines Gene Locus: chr3:6465155-6467139 Feature type: polypeptideProtein Sequence
Length: 379
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.135 | 1.534 | 0.816 | 0.637 | 1.099 | 0.744 | 0.817 | 1.187 | 1.231 | 1.034 | 1.199 | 1.707 | 1.246 | 0.507 | 0.915 | 0.678 | 0.865 | 0.919 | 1.624 | 1.397 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5228
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.666
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRRKMLRKTAKGTSRN
|
— | — | — | — | — | — |
0.138
|
— | — |
0.057
|
0.131
|
0.058
|
0.173
|
0.376
|
0.576
|
0.412
|
0.008
|
0.187
|
0.916
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007687
|
1.000
|
1.000
|
Hsc_gene_15578.t1
|
Hsc_gene_15578.t1
|
— |
Q9XTR8.1 Lipase ZK262.3 [Caenorhabditis elegans]
|
KAF7627259.1 Lipase_3 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629
|
GO:0003674_0.889|GO:0003824_0.786|GO:0005575_0.765|GO:0110165_0.765|GO:0016787_0.702|GO:0016788_0.664|GO:0052689_0.650|GO:0016020_0.570|GO:0005622_0.561|GO:0043226_0.525|GO:0008150_0.523|GO:0043229_0.521
|
IPR002921+176-313+|IPR029058+95-371_103-369+
|
— |
PF01764+176-313+Lipase_(class_3)
|
— |
PTHR45908+85-377+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-379
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.732
|
42905.050
|
8.515
|
9.500
|
25.858
|
13.720
|
45.383
|
54.617
|
14.776
|
11.082
|
48.285
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
904.088
|
10.239
|
405.381
|
767.508
|
1096.859
|
291.435
|
887.383
|
491.036
|
1386.266
|
1434.493
|
1413.824
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.077
|
6.089
|
1.029
|
0.484
|
-1.897
|
1.617
|
0.652
|
0.994
|
— | — | — | — | — |
No JSON data available for plots.